Assembled genome (size, level, N50, BUSCO)
Predicted gene models with CDS / transcript / protein sequences
InterPro, Pfam, PANTHER, GO and KEGG assignments
OrthoFinder orthogroups and TF / ubiquitin families
RNA-seq samples with expression values (TPM)
Positive / negative co-expression edges
scRNA-seq datasets, cell atlas and marker genes
| Assembly name | Ho_v1 |
|---|---|
| Assembly level | Scaffold |
| Assembled by | GCA_004118135.1 |
| Genome size | 1203.9 |
| Scaffolds | 447335 |
| Contigs | 470486 |
| Scaffold N50 | 5395 |
| Contig N50 | 4942 |
| GC content | 28 |
| BUSCO | C:88.1%[S:75.4%,D:12.7%],F:5.3%,M:6.6% |
| Protein-coding genes | - |
| Proteins | - |
| Chromosomes | - |
| WGS accession | JALDAD01 |
| BioProject | PRJNA419866 |
| Submitter | University of Geneva |
| Year | 2019 |
| Reference | An evolutionarily-conserved Wnt3/β-catenin/Sp5 feedback loop restricts head organizer activity in Hydra Nature Communications [link] |
Availability shown here is recomputed from the live database every hour (last built 2026-09-16 19:27). If a data type is listed as unavailable for Hydra oligactis, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.
