Detailed information of HOLI00001.G49331 in Hydra oligactis

Genomic Location: HOLI00001:378700...379715
NR annotation: WP_095159234.1, MULTISPECIES: phenylalanine--tRNA ligase subunit alpha [unclassified Pseudomonas]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B1J6U8Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas putida (strain W619) OX=390235 GN=pheS PE=3 SV=1
A5W5D7Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=pheS PE=3 SV=1
B0KKR4Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas putida (strain GB-1) OX=76869 GN=pheS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004071 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01409
all species →		tRNA-synt_2dtRNA synthetases class II core domain (F)DomainInterproscan
PF02912
all species →		Phe_tRNA-synt_NAminoacyl tRNA synthetase class II, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR022911
all species →		FamilyPhenylalanine-tRNA ligase alpha chain 1, bacterialInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR002319
all species →		DomainPhenylalanyl-tRNA synthetaseInterproscan
IPR010978
all species →		Homologous_superfamilyClass I and II aminoacyl-tRNA synthetase, tRNA-binding armInterproscan
IPR004188
all species →		DomainPhenylalanine-tRNA ligase, class II, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11538
all species →		PHENYLALANYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004826
all species →		Molecular Functionphenylalanine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006432
all species →		Biological Processphenylalanyl-tRNA aminoacylationInterproscan
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0043039
all species →		Biological ProcesstRNA aminoacylationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01889FARSA, pheS; phenylalanyl-tRNA synthetase alpha chainEC:6.1.1.20
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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