Gene detail

Detailed information of HOLI00001.G49842 in Hydra oligactis

Genomic Location: HOLI00001:1025643...1027700
NR annotation: CAE45118.1, putative ring-opening enzyme [Pseudomonas sp. Y2]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00001.g49842.t1

ATGTCTGCTGCCCCTACCTTGCAAAGCTTCATCGCCGGCCGCTGGATCGGCCAGCACGGCGCCCAGACCCTGCGCAGCGCCATCGACGGCCATGTCCTGGCCCATGCCCACGAGGAACGCCCGGACTTCGCCGAGGCCCTCGCCTGGGGCCGCCAGCAGGGCCGCGCCGGCCTGATGGGCCTGGACTTCCAGCAACGCGCCCAGCGCCTCAAGGCACTGGCGCTGTACCTCGCCGAACGCAAGGAACAGCTCTACGCCCTGTCCCACCACAGCGGCGCCACCCGTGCCGACAGCTGGATCGATATCGAAGGCGGCAACGCCACGCTGTTCTCCTACGCCGGCATCGGTGCCCGCGAGTTGCCCTCGGGCAATCTGGTCCACGAAGGCCCGGCGATCCCGCTGGGCAAACAGGGCCACTTCGCCGGCAGCCATATTCTGGTGCCGCGTGCCGGCGTCGCCGTGCACATCAACGCCTTCAACTTCCCGATCTGGGGAATGCTGGAGAAGTTCGCGCCGACCTTCCTCGCCGGCATGCCGTGCATCATCAAACCGGCCACCGCCACCAGCTACCTGACCGAAGCCGTGGTGCGCCTGATCGATGAATCCGGGCTGTTGCCCGCTGGCGCCCTGCAACTGGTGATCGGCAGCACCGGCGACCTGCTCGAGCGCCTCGACGGCCAGGATCTGGTGACCTTCACCGGCTCCGCCGACACCGCGGCGAAACTGCGGGTCACCCCCAGCCTGATCCGTAACTCGGTACCCTTCACCGCCGAGGCCGACTCGCTGAACTGCGCGATCCTCGGCCCGGACGTGACCCCGGACAGCGAAGAGTTCGAGCTGTACATCAAGGAAGTGGCGCGAGAAATGACCACCAAGGCGGGGCAGAAATGCACCGCCATCCGCCGTGCGATCGTCCCGGCGAAATACCTGGACGCGGTGGCGACCCGCCTGCGCGAGCGCCTGAGCAAGGTGGTGGTGGGTGACCCATCGGTGGAAGGTGTACGCATGGGCGCCCTCGCCTCCCACGCACAACAGGCCGACGTCGGCGAGCGGGTCGAACAACTGCTGCAAAGCTGCGACCTGCTGTTCGGTGCCCGCGACGGCTTCGAGCCCCGTGGTGAAGGCGTGGCCAACGGCGCGTTCTTCGCCCCGACCCTGCTGCTGGCCCGTGACGCCCATGCCGACGGCGGCGCCCACGATATCGAAGCGTTCGGTCCGGTCAGCACCCTGATGACCTACGACGATCTCGACGAAGCGCTGGTGCTGGCCGCCCGTGGCAAGGGCAGCCTGGTGGCGAGCCTGGTCACCGCCGACCGCGCGGTGGCAGCCAAGGCCATTCCGGTTGCGGCGGCCTGGCATGGCCGCTTGCTGGTGCTGGACCGCGAAGCGGCGCTGGAATCCACCGGCCACGGCTCGCCGCTGCCGCAACTGAAGCACGGCGGCCCCGGTCGCGCCGGCGGTGGTGAAGAACTGGGCGGCCTGCGCGCGGTCAAGCACTACCTGCAACGCGCCGCGGTACAGGGCTCACCGAGCATGCTCACGGCGGTCACCGGCGAATACGTGCGCGGCGCCGAGGTGATCGAAACCGACGTCCATCCGTTCCGCCGCCACTTCGAAGACCTGCGCATCGGCGAGTCGCTGCTGACCCACCGCCGCACCGTCACCGAGGCCGACCTGGTCAACTTCGGCTGCCTGTCGGGCGATCACTTCTACATGCACTTCGACGAAATCGCCGCCCGCGAATCGCAGTTCGGCAAACGCATCGCCCATGGCTACTTCGTGCTGTCGGCGGCGGCCGGACTGTTCGTCAGCCCGGCGCCCGGGCCGGTGCTGGCCAACTATGGCCTGGACAACCTGCGCTTCATCAACCCGGTGGGCATCGGCGACACCATCCAGGCACGCCTGACCTGCAAGCGCAAGATCGACCAGGGCAAGAAGAGCCCGCAGGGCATTCCGCAAGGGGTGGTGGCGTGGGATGTGGAGGTAACCAACCAAGTGGGAGAACTGGTGGCCAGTTATGACATCTTGACGTTGGTGGTGAAGCGGGAGGGTAAGTAG

Transcript

HOLI00001.g49842.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P77455	Bifunctional protein PaaZ OS=Escherichia coli (strain K12) OX=83333 GN=paaZ PE=1 SV=1
Q84HH8	3,4-dehydroadipyl-CoA semialdehyde dehydrogenase OS=Aromatoleum evansii OX=59406 GN=boxD PE=1 SV=1
P49251	Protein MaoC OS=Klebsiella aerogenes OX=548 GN=maoC PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0062619 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01575 all species →	MaoC_dehydratas	MaoC like domain	Domain	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002539 all species →	Domain	MaoC-like dehydratase domain	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR011966 all species →	Family	Phenylacetic acid degradation protein PaaN	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR029069 all species →	Homologous_superfamily	HotDog domain superfamily	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43111 all species →	ALDEHYDE DEHYDROGENASE B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02618	paaZ; oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase	EC:3.3.2.12 EC:1.2.1.91	Phenylalanine metabolism	ko00360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →