Gene detail

Detailed information of HOLI00001.G49978 in Hydra oligactis

Genomic Location: HOLI00001:1209302...1211701
NR annotation: WP_262128798.1, DUF637 domain-containing protein, partial [Pseudomonas sp. 5P_5.1_Bac1]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00001.g49978.t1

ATGAGAGTTTGTATGCGGCCGGTGATGGTTTTCGTGTGCGCTTTTTTAAAAACATGGTTGATTAATGAGACGGCGAGAGTTGCGGGAGTCACTGCGGGTGTTACCGAAGGCTTCATCGACCCGAATCTGAGCGGTGGAGATGCTGCTTTCAAGAGCGCTGCGGGTTGGAACCTGGGAACGGTAGACGGGATCGCCGGTTTCAGCGTTCGTGCCGGGGCCATTGGCGTGGCCAACGGCGCAATCACGACTGCGGTTGCCGGTGGAAGTCTTGGTGACAACCTTGCAGGTGGCCTGGTTAGCCAGGCAGCGAACGTAACGGCTGCCGTTGGCTTCAACTTCGTGGGCAGCTATGCCGAGCAGCAGTTCGAAGCAGCCAGGTTGGCCTGGGACAGCGCTGGCATGGCGATGTGGGCCGAAGGTGGTGCTGGTCGTGTGGCCATGCACGCCTTGATGGGTGGCGCGGTGTCAGCCGGCACCGGAGGGGACTTCATCTCGGGTGCGGTAGCTGCAGGCGCCAGTCAGGCGATGGCTGGAGTGCTCAACGATGCATTTGAGAAGCAGCCGGAGCTGCGCGAGGCCTTTGCCCAGATCGTCGGCCTGGCGTCTGCTGGTCTGGCTGGCGCTGATTACGAGAAAGGCGCCTGGGTCGCCCAGATGGCTGATCAGTACAACCGTCAGGCGCACCCTGAGGAGGTGCGCCTGATCAAGGAGCAGGCGCAGGCGCTGGCTACTGAACAGAACATCAGCGTTGCCGAGGCCGAAAGGCGGATGGCCCAGGCCTTTGCCTACTACACCGACAAGAAATGGCAGGAACTGCTGACCAAAGATGGGCTGGTGATCGACTCCAGCACCATGACCCATCTGGCGAAGGCACTGACGCCATTGGCCAACCGATATGACGTCAATGAAGTAGTCGTCACCGGTGATGTACCCGTAGTCACCGAGCAGAAGCCGTACACAGCTGATCGGACGTTGGCCCTGCTTCAAGGGTATGCGGCCAATCACAACGAGAGCTTCAGCGATCCAAAAATCAACAGCGAACTCCTGGGTAGCTGGAAGCCCGACGCGTGGGATGAGTACAAGCAGTACTACGACCGAAACCTGACGTTGAACACCGAAAAGCAGCCCTTGGGGTTTGGCGCGTTCGAGGGTGTTGGCAGTCAGCTCACCAAAACTGCGGAGGGTCTTTACAGCCTTGGTAACGGACTGATCTACGACCCAGAGGGAACCACGCGCGGTGTGCTGCATGGCTTGGCCTCCACCGACCCGTTTGACTGGGGTTATCAGAAAGCCAATGGACTGGCCGAGCTGTATCGCCTTCAAGGCGATTTCGATGCAGCGGCCAAAGTGGAAATGGAGTGGAAAACCGGATTAGCCCTGACTCTGATCCCTGCTGGACGCGTCGGCAAAATCGCGACTGACCTGGCAATCGCTGCCGAATTCAAGGCACTGCAAGAGAGCGCATGGAAGGCTTCGCTCAGGCCATGTTGCTTTGCAGCCGGTACGTTGGTGGCGACACCGAGCGGTGATCGTGCAATCGAAACCATCAAGGTGGGCGATGTTGTCTGGACCAAGCCGGAGCAAGGCGGCGAGCCATTGCCCGCTGCGGTGCTTGCAACACACTTTCGTAACGACCAGCCGATCTACAAGTTGACCCTCGAGAGCACCCGAGCAGATGGCAAGGTCAAGCGCGAGGACGTGATGGTCACGCCGAGCCACCCGTTCTATGTGCTGGCGCAACGTGCTTTCGTTCCGATGAGCGACTTGCGGATAGGGGATCTGTTGCAGTCATTGGGCGACGGGGCAGGGGAAGGCACTTCAAGCCGCGTAGCGTCGGTGGCGTTGTTCAAGCCGGTCGGGGAGACATTCAACCTGACGGTGGATGTTGGGCACACGTTCTATGTGGGTGAGCTGAAGACGTGGGTACATAACACTGGGCCGTGTGATATTAATGGTGGGCCGAAGAGCACCGGGAGTGCGGTGGTTGATGGGGCTGGTTCGGGTGTAAAAGGAACAGGGCAGGCTCTGCGCGAAGTAGAAGTTAGCTCTGGTGGCAAGGGGGCGTGGACGAAGGAGCTCAACAAACCAGAGCCGAACACGATTTATAAAGTAGACGGGAACAAGACCTATCAAACAGATAGTTTTGGGCGTGTTGATAAGGTTGAGTCTAATCTCTCACTAACTAGAAATGACCGAAATACATAG

Transcript

HOLI00001.g49978.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006040 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04830 all species →	DUF637	Possible hemagglutinin (DUF637)	Family	Interproscan
PF07591 all species →	PT-HINT	Pretoxin HINT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR006915 all species →	Domain	Domain of unknown function DUF637, haemagglutinin putative	Interproscan
IPR006141 all species →	PTM	Intein N-terminal splicing region	Interproscan

PANTHER

No PANTHER signature was detected for HOLI00001.G49978. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0016539 all species →	Biological Process	intein-mediated protein splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00001.G49978.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.