Genomic Location: HOLI00001:2055856...2056779
NR annotation: WP_262128617.1, acetaldehyde dehydrogenase (acetylating) [Pseudomonas sp. 5P_5.1_Bac1]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g50632.t1 |
| Transcript |
| HOLI00001.g50632.t1 |
| Protein |
| HOLI00001.G50632 |
| UniProt accession | Description |
|---|---|
| A1K6Y5 | Acetaldehyde dehydrogenase 2/3 OS=Azoarcus sp. (strain BH72) OX=418699 GN=mhpF PE=3 SV=1 |
| B2UJF2 | Acetaldehyde dehydrogenase OS=Ralstonia pickettii (strain 12J) OX=402626 GN=Rpic_4618 PE=3 SV=1 |
| B1Y2E6 | Acetaldehyde dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) OX=395495 GN=Lcho_3341 PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09290 all species → | AcetDehyd-dimer | Prokaryotic acetaldehyde dehydrogenase, dimerisation | Domain | Interproscan |
| PF01118 all species → | Semialdhyde_dh | Semialdehyde dehydrogenase, NAD binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015426 all species → | Domain | Acetaldehyde dehydrogenase, C-terminal | Interproscan |
| IPR003361 all species → | Family | Acetaldehyde dehydrogenase | Interproscan |
| IPR000534 all species → | Domain | Semialdehyde dehydrogenase, NAD-binding | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
HOLI00001.G50632 in Hydra oligactis.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008774 all species → | Molecular Function | acetaldehyde dehydrogenase (acetylating) activity | Interproscan |
| GO:0019439 all species → | Biological Process | obsolete aromatic compound catabolic process | Interproscan |
| GO:0016620 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18366 | bphJ, xylQ, nahO, tesF; acetaldehyde/propanal dehydrogenase | EC:1.2.1.10 EC:1.2.1.87 | Dioxin degradation | ko00621 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
