Gene detail

Detailed information of HOLI00001.G51131 in Hydra oligactis

Genomic Location: HOLI00001:2718526...2719197
NR annotation: WP_236412020.1, heavy metal response regulator transcription factor [Pseudomonas syringae]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q44006	Transcriptional activator protein CzcR OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=czcR PE=2 SV=1
I1WSZ4	Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain 1026b) OX=884204 GN=irlR PE=3 SV=1
P0DMK7	Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain K96243) OX=272560 GN=irlR PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004383 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF00486 all species →	Trans_reg_C	Transcriptional regulatory protein, C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR001867 all species →	Domain	OmpR/PhoB-type DNA-binding domain	Interproscan
IPR039420 all species →	Family	Transcriptional regulatory protein WalR-like	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR006291 all species →	Family	Transcriptional regulatory protein CusR-like, heavy metal response	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48111 all species →	REGULATOR OF RPOS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000156 all species →	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0032993 all species →	Cellular Component	protein-DNA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07665	cusR, copR, silR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR	-	Antimicrobial resistance genes	ko01504	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.