Genomic Location: HOLI00001:3027310...3029455
NR annotation: WP_175651529.1, flagellar protein export ATPase FliI [Pseudomonas sp. Marseille-P9899]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g51361.t1 |
| Transcript |
| HOLI00001.g51361.t1 |
| Protein |
| HOLI00001.G51361 |
| UniProt accession | Description |
|---|---|
| Q9I4N1 | Flagellum-specific ATP synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=fliI PE=3 SV=1 |
| P26465 | Flagellum-specific ATP synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=fliI PE=1 SV=1 |
| P52612 | Flagellum-specific ATP synthase OS=Escherichia coli (strain K12) OX=83333 GN=fliI PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015367 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00006 all species → | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain | Domain | Interproscan |
| PF18269 all species → | T3SS_ATPase_C | T3SS EscN ATPase C-terminal domain | Domain | Interproscan |
| PF02108 all species → | FliH | Flagellar assembly protein FliH | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR020003 all species → | Active_site | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Interproscan |
| IPR005714 all species → | Family | ATPase, type III secretion system, FliI/YscN | Interproscan |
| IPR000194 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR040627 all species → | Domain | T3SS EscN ATPase, C-terminal | Interproscan |
| IPR050053 all species → | Family | ATPase alpha/beta chains | Interproscan |
| IPR020005 all species → | Family | Flagellar export ATPase FliI, clade 1 | Interproscan |
| IPR018035 all species → | Domain | Flagellar assembly protein FliH/Type III secretion system HrpE | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15184 all species → | ATP SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0030254 all species → | Biological Process | protein secretion by the type III secretion system | Interproscan |
| GO:0030257 all species → | Cellular Component | type III protein secretion system complex | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
| GO:0044780 all species → | Biological Process | bacterial-type flagellum assembly | Interproscan |
| GO:0071973 all species → | Biological Process | bacterial-type flagellum-dependent cell motility | Interproscan |
HOLI00001.G51361.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
