Genomic Location: HOLI00001:3536732...3538692
NR annotation: CEE28928.1, beta-ketoadipyl CoA thiolase (modular protein) [Xanthomonas citri pv. citri]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g51770.t1 |
| Transcript |
| HOLI00001.g51770.t1 |
| Protein |
| HOLI00001.G51770 |
| UniProt accession | Description |
|---|---|
| Q51956 | Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida OX=303 GN=pcaF PE=3 SV=1 |
| Q9I6R0 | Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pcaF PE=1 SV=1 |
| Q8VPF1 | Beta-ketoadipyl-CoA thiolase OS=Pseudomonas knackmussii (strain DSM 6978 / CCUG 54928 / LMG 23759 / B13) OX=1301098 GN=pcaF PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001053 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01144 all species → | CoA_trans | Coenzyme A transferase | Domain | Interproscan |
| PF00108 all species → | Thiolase_N | Thiolase, N-terminal domain | Domain | Interproscan |
| PF02803 all species → | Thiolase_C | Thiolase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037171 all species → | Homologous_superfamily | NagB/RpiA transferase-like | Interproscan |
| IPR016039 all species → | Homologous_superfamily | Thiolase-like | Interproscan |
| IPR002155 all species → | Family | Thiolase | Interproscan |
| IPR020615 all species → | Active_site | Thiolase, acyl-enzyme intermediate active site | Interproscan |
| IPR004165 all species → | Family | Coenzyme A transferase family I | Interproscan |
| IPR012793 all species → | Family | Beta-ketoadipyl CoA thiolase | Interproscan |
| IPR050215 all species → | Family | Thiolase-like superfamily, Thiolase | Interproscan |
| IPR020616 all species → | Domain | Thiolase, N-terminal | Interproscan |
| IPR020617 all species → | Domain | Thiolase, C-terminal | Interproscan |
| IPR020610 all species → | Active_site | Thiolase, active site | Interproscan |
| IPR020613 all species → | Conserved_site | Thiolase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43853 all species → | 3-KETOACYL-COA THIOLASE, PEROXISOMAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
| GO:0016747 all species → | Molecular Function | acyltransferase activity, transferring groups other than amino-acyl groups | Interproscan |
| GO:0008410 all species → | Molecular Function | CoA-transferase activity | Interproscan |
| GO:0019619 all species → | Biological Process | 3,4-dihydroxybenzoate catabolic process | Interproscan |
| GO:0003988 all species → | Molecular Function | acetyl-CoA C-acyltransferase activity | Interproscan |
| GO:0006635 all species → | Biological Process | fatty acid beta-oxidation | Interproscan |
| GO:0010124 all species → | Biological Process | phenylacetate catabolic process | Interproscan |
HOLI00001.G51770.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
