Genomic Location: HOLI00001:3603327...3604821
NR annotation: WP_095154692.1, MULTISPECIES: ATP-binding protein [unclassified Pseudomonas]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g51828.t1 |
| Transcript |
| HOLI00001.g51828.t1 |
| Protein |
| HOLI00001.G51828 |
| UniProt accession | Description |
|---|---|
| Q9HWA7 | Two-component sensor PprA OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pprA PE=1 SV=1 |
| Q02482 | Putative sensor protein Sfri_3689 OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=Sfri_3689 PE=3 SV=2 |
| P26489 | Sensor protein FixL OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=fixL PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011605 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00989 all species → | PAS | PAS fold | Domain | Interproscan |
| PF00672 all species → | HAMP | HAMP domain | Domain | Interproscan |
| PF02518 all species → | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013767 all species → | Domain | PAS fold | Interproscan |
| IPR004358 all species → | Domain | Signal transduction histidine kinase-related protein, C-terminal | Interproscan |
| IPR005467 all species → | Domain | Histidine kinase domain | Interproscan |
| IPR003594 all species → | Domain | Histidine kinase/HSP90-like ATPase | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR003660 all species → | Domain | HAMP domain | Interproscan |
| IPR035965 all species → | Homologous_superfamily | PAS domain superfamily | Interproscan |
| IPR000014 all species → | Domain | PAS domain | Interproscan |
| IPR036097 all species → | Homologous_superfamily | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Interproscan |
| IPR003661 all species → | Domain | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43065 all species → | SENSOR HISTIDINE KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0000155 all species → | Molecular Function | phosphorelay sensor kinase activity | Interproscan |
HOLI00001.G51828.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
