Genomic Location: HOLI00001:3616471...3618845
NR annotation: VFT31704.1, UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g51838.t1 |
| Transcript |
| HOLI00001.g51838.t1 |
| Protein |
| HOLI00001.G51838 |
| UniProt accession | Description |
|---|---|
| Q4K6J4 | UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=murC PE=3 SV=1 |
| A5W8P9 | UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=murC PE=3 SV=1 |
| Q88N75 | UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=murC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0016700 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08245 all species → | Mur_ligase_M | Mur ligase middle domain | Domain | Interproscan |
| PF07478 all species → | Dala_Dala_lig_C | D-ala D-ala ligase C-terminus | Family | Interproscan |
| PF01225 all species → | Mur_ligase | Mur ligase family, catalytic domain | Domain | Interproscan |
| PF01820 all species → | Dala_Dala_lig_N | D-ala D-ala ligase N-terminus | Family | Interproscan |
| PF02875 all species → | Mur_ligase_C | Mur ligase family, glutamate ligase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036565 all species → | Homologous_superfamily | Mur-like, catalytic domain superfamily | Interproscan |
| IPR005905 all species → | Family | D-alanine--D-alanine ligase | Interproscan |
| IPR005758 all species → | Family | UDP-N-acetylmuramate--L-alanine ligase | Interproscan |
| IPR013221 all species → | Domain | Mur ligase, central | Interproscan |
| IPR011095 all species → | Domain | D-alanine--D-alanine ligase, C-terminal | Interproscan |
| IPR036615 all species → | Homologous_superfamily | Mur ligase, C-terminal domain superfamily | Interproscan |
| IPR000291 all species → | Conserved_site | D-alanine--D-alanine ligase/VANA/B/C, conserved site | Interproscan |
| IPR013815 all species → | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR016185 all species → | Homologous_superfamily | Pre-ATP-grasp domain superfamily | Interproscan |
| IPR000713 all species → | Domain | Mur ligase, N-terminal catalytic domain | Interproscan |
| IPR050061 all species → | Family | Peptidoglycan biosynthesis MurCDEF | Interproscan |
| IPR011127 all species → | Domain | D-alanine--D-alanine ligase, N-terminal domain | Interproscan |
| IPR004101 all species → | Domain | Mur ligase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43445 all species → | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008716 all species → | Molecular Function | D-alanine-D-alanine ligase activity | Interproscan |
| GO:0008763 all species → | Molecular Function | UDP-N-acetylmuramate-L-alanine ligase activity | Interproscan |
| GO:0016881 all species → | Molecular Function | acid-amino acid ligase activity | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
HOLI00001.G51838.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
