Gene detail

Detailed information of HOLI00001.G51865 in Hydra oligactis

Genomic Location: HOLI00001:3646591...3652002
NR annotation: WP_256680146.1, S8 family serine peptidase [Pseudomonas sp. Marseille-P9899]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00001.g51865.t1

ATGACTAGGTTGAGTGAACAAGATATTAAACATGCCAAGGGGCTTCTCCATGGAGAGGGGCCAGCAGCGGCTTATGATTTTCTGGCTGCAAAAGGAGACCGTTACGCGGTCCTTGCTAACGGAGTAGTTAAGGTAAATTCTATAGCGGGAGTTTCTGCGCTAAGTTACATGAAGTTGGTTGCGAATAATGCAGGGAAACCTTTGAGTGATGAAGATGTATCGAAAATCATGTTCAGTATGGCAGAGGGTTATCTAGATAATCGGACTGTCCATCTGAAAGATGGCGTTGTTGAGGACGAACTAGATCATGAAGGTGCGACAATATTTCACAATAATACTTTTGAAGAGTTTGGCCTCCCTCGTGAGGCCTGGACGCTACACGCAGTTCTCGATGTCTTGACCGAAGATGGGAAAAAAGCATATTGGACGGAGGTGCTTGACTCCGCAGGAGATGCTATTAAAGAAGCAGCTCTGACAGGCAAAACCTATCAGGGTATGGCGCTGGTCCAAGCGATAGCCCCTCCAGAACAAAGTGAAAAGGCTAAAAAATTCCTCTCCCTTTTCGATTCCCCGTCAGGCATGGCAGAGTTGGCTGATACGGTCCTCACAGAATTGATGAAATCCATCAAAGGAATGTTCTCCGACGGCCCTGAAGCCCCGCAAAGTGACACCCTCAATATCCAGATCACGCCCTCTCCGCCGCCCCAGCAACAAATCCTCGACGAAGACCGCATCCGCGATGACGTATCCAGTGGTTATGTCGACCGCCGCGCAACCCACAGCATCGCCTTCATCAACGACACGTTGAACATGACCGATTTTACTTCCGTGCAGATGGGCAGCTTGGCCACGGGCGGTATTCGTCCCGGTGAGTTGCAGGCCGACCCCAATGTCCAGCCTGCCTCCTATCTCTCGCTCTTTCACAAGGACGGCAAGATCGATGGGGCAACGGATTTCGGCCTGAGCAATGCGGTGTCGCTCAACGGCCTGGCGGCGCAGACCACGTTCAATACCTTCGTCGACCCGTTGCTGCTGGACCTGACCGGTCAGGGCGTGGGTATGACGCCTCTCAGTGACGGTGTGCTGTTCGACGTCGACAACAGCGGCACGCTGCGGCGAACGGGCTGGGCCGATCAGCATACTGGCCTTCTGGTGCGCGATGACGGCAGTGGCGTGCGTGCTATCAGCCAGTTGTTTTCCGAGTACTACGGTGGGCAGGCGGGCGTCGATGGTGCGCCGGGCGAGCGCCCGTACAAGGACGGTTTCGCGGCCCTTGCCAGCGAGGACAGCAATGCCGATGGCGCAATCGATTCGCAGGATTCGGTCTGGAGCCAGTTGCGCGTCTGGGTGGACGGCAATCAGAACGGCCATGCCGATGGCGCTGAGCTCAAGACCCCGGATGAGTTGGGCATTACCTCGATCAGGGTCGCTCAGGTCAGTCCGGTCGGGGAGTTGCGCCACGGCAACCAGGTGATCGCACGCGGGAGCTTTTCCATTCAGGGAGTCGAGCGGGAAATCCTTGCGGTCAACTTTCTGTCCGACGCAGTCAGCAACCAGATCATTTCCCAGGCCGGTGGCAGCACGCTGATTTCGAGCGCACAAGGCATTATCCGGCGGGCCTTCCTGGGGCAGGACAGCGCAGGGGAAACACTGGATGCGGCGGTGCTGGGCGTCGACAACCTGTACGGCGGCAGCGGCGCCGATGTGCTCAAGGCCGCGGCCGCCGGCAGTTGGCTGGCCGGTGGGCAAGGCAGCAATACCTATATCGGCGGCGAGGGTGACGATGTCTTTGTTATCAGCGCCAGCGATGATCAGCGCAATATCAAAGGCAATGGCGGGCGTGACACTGCGCTGATCGTCGGCGACCAGGGCGTCGGGCTGAACATGGCCGAAGCGGGCCTGACCATCGCGCAGGGCGGTCGCGGCAAAGACATCATCGCCAGTGGTGGCCGTCGCGGTGTTTTCATCAAGGGTGGCCTGGGCGGTTCCACCCTGATCGGCGGCGGGGGCAACGATGTGCTGGCGGGAGGGGCGGGACGCAACACCATCATCGGCGGCAGCGGCAAGTCGGTGATCTACGCGGGGCCACAGGGAGACACCATCCGCGGCTCCGATGCCGGCAGCATCATCTACGCCGGTGGTGGCGCTGACCGCATTCAGGGCGGGCCGGCCGATGATGTCATCGAAGCCGGGCGCGGCGATGCGCAGATCGATGGCGGCGGCGGGACCAACCTGGTGTCGCTGCACGGTAGCCACGACCAGTACCTGATTGGTCGCACCAGTAGCGGTTACGAGATAACGGACAAGGTGGCCGGGCGCGATGGCAAGCTCACCCTGACGAATATCCAGAAGCTGGGTTTCACTGATCTGTCGTCGGTCGATCTCGACCTGCCGAATGCGTTGCCGATTGCCGATACCGTTGACGCGGCGCCGAATCTTCGCGAGGCGGGACAACTCATCCCGGCGGCAGCGCTGGTGGCCAATGACCAGCCGCTGAACAGCTCGGGGGCATTGCGCATTTCCGCTATCAGCGACGCGCGAGGGGCGACGGTCAGCCTCACCGAGCAGGGGGATGTGCTGGTGTCGCCGCTGCCGGGCCATACCGGCATCATCAGTTTCAAATATGACCTGGTCGACGCCCAGGGCAATCTTTCGGCCTCCGTTGTCGACCTCGATACGGGGGCGACGGCACCGCTGCGCGCCATGGTGACGTTGCGTGAAGCCGGTGCGCCGTTGGACCCGCTTGCCGCGCGGCAGTGGTATCTGGAAGACATCAATGTGCTGCCGGTCTGGAGCGATTACAGCGGCAAGGGCGTGCGCATCGGGCAGTTCGAGCCGGGCGGCAGGTTTGCGGTAAGCCCGGAAATCTTCGATATCCAGCACCCTGACCTGCAGGCCAACGTCGATCAGGCCTGGCTGCAGACCCAGCGCGCCAGTGGCGCCATGCCTACCGTCGTTTCGAACCATGCGACCCAGGTCGCGGGCGTCATGGTCGCGGCGCGAAATAGCGAAGGCGGCATAGGCATCGCGTACGAGGCGACGCTGGGTGGTCATTACCTGGCAAACAGCGGCGCGGACCTGACCCGCCTTGGGCAAATGATCAACTACGACGTCGCCAACAACAGTTGGGGCTTTGTCAACGATTTTGCCCTCACCAGTCTGCAGGGTGGGCTGATCAATACCTCGACGGCATTGGCAGCCAACGCACGCTACGCCGCCGGGAACGGGCGCGGCGGGCTTGGCACCATCATCGTGGCGTCGGGCGGAAATGCACGGGCCAAAGGCGGCAGCGCACAGGGCTCCCTGACCAACAACAACCGCTTCACCATAGAAGTCGGCGCGATCAACGCCAAGGCGGACCTGTCGACGCTGCAGGTTGCCTCCGCGCCGTTCTCCAATCCCGGCACCAGCCTGCTGGTTTCAGCGCCGGGGAGCCATGTGTTTTCCAGCAGTCATTCGCTGGAGGCCGAACGCGGTGCCCGGATCGGCAACGCCTACAGTGCGACCCAGGGCACCAGCTTTGCCGCGCCGATCGTGTCTGGCGTCGTGGCGTTGATGCTCCAGGCCAATCCCAATCTGGGGTATCGGGATGTGCAGCACATTCTTGCCCTGTCTGCGCGCAAGGTCGATGATTCGAGTACCGAGTGGCGTTTCAACGGCAGCCGCAACTGGAATGGCGGTGGCCAGCATGCCAGTGATGACTATGGTTTCGGCCTTGTGGATGCGCGGGCAGCGGTGCGTTTGGCCGAGTCGTGGATCGGGCAGGCGACTGCTGCGAACGAGAGCGTGCTGGCTGCGTCAAGCTCCGCACTGGGACAGCCGGTTGCCGCCAACGACGTCGTGCGATTCTCGTTGCCGATAGCGTCGGGCGTGCAGGTCGAGCATGTCGAGGTCGACATCGATGCGCAGGTCGGGCGCCTGGGTGACCTGACCCTGAAACTGATCGCTCCGTCGGGCACACCGAGCCTCCTGCTCGCCCGCGCCGGCAAGGCGCCCGGCAGTGGCGATGACGACCTTGGCAGCCTGCGCGAAGGCGAGTTCAGGTACACCTTCATGACCACTCACGACCGCGGCGAGGCCTCAGGCGGAGACTGGACGCTGGAAGTGAGCAATACCGCCAACGGCTTGCCCATGGCGTTGAACAACTGGGGGCTGCGTGTGTCTGGTAAGCCCGTCAGTCTCGACGACACCTACTTCTATACCGATGAGTACGCCCTCGCTGTAAGCGGCCAGCCCGAGCGTGCCGTTCTGGATGATGCGGTCAATGGCCTGGCTGGTGGCCGCAATACTCTGAACGCGGCGGCGGTGAGCGGGGATGTTGTCGTCGACCTGGGCGCGGGCATCGCCAGTATCGCCGGTGCGGGATTGACCCTGGTCAACGGCGGCATACAGAACCTGATCAGCGGTGATGGCAACGACACATTGGTGGCTGCCGGCGATGATGCGCTGCTCGATGCAGGGCGTGGCCGGAACCGTCTGGTGGGTGGTGCGGGCAAGGACGTGTTTGTCGTGCATCGGCGTGCCGGAGGTCAGGATTCGCTGGAGAACTTCGAGGTTAGCCGCGATGTCGTCGATCTGGTCGGGTTCAGCGGGAAGCAGTTTGGCGACCTGCAGCCTGAGCCAGGGGAGGGAGGTCTCAAACTGAACCTGGGAGATGGGCAATACCTGGTGTTTCCCGGGCACGTTGCATCGGCACCGGGCGAGTCGGACTTCCGCTTCAGGGATACCTTCGTTGCTCCGGCGGCTTATGTCGATAGCAGCATCGTCGAACAGTCCGCAGACGCGCCGGGTGTTGTCTTGCTCAATGGTGGCGGGGGTGGCGTGAGCTATTCCACTGATGCGTCCGGGCAGTTCGTGGCGTCGTTGTCGGGCACGGTGTACAGCCGGGATAGCGCGGCGAAGGATGTGTTCGTGGTGGTGAAGCAGGATGGTGTGGACCACTACGGCAACGCCTTGCGTGGCTTCAGGCATGGTGTCGACAAGATCGACCTGAGCCAGACCGGCATCAGCAACTTTGAGGCGCTCGAACTGAACAAGGTCCACCGGGCGACCATCAATGGTTTGTCGCAGATTCACGGTGTGTCGGTGCGCACCTCCGCTTTGGGCAGTGGTGCCAAGCCTGTGGAGCTGCTGTATCTGGATACGCTCGAGCTTGCGCAGATCACCCGGGAAGACTTCATCTTTGCGGATGCCGGGCAGATGGTCGCTGAGCCGGTTGTCGCGCAGAGCGAGAGCGTGCCAGCGGTAGTGGCTTCGGAGCCACTGGTGGCCAGCGCGGAGCTGCGGGCATTGCCTGACATCGGTAGCCTGATCGACTCGATGGCGGCATTCGCGCCGCCGGCTCAGGCGGGATTCTTTCCACGGGGGGATCAGGCGTTGGCGTGGCAACCGGCCCTCGCGGTCGGTGTCTGA

Transcript

HOLI00001.g51865.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23377	Furin OS=Rattus norvegicus OX=10116 GN=Furin PE=1 SV=1
P29119	Furin-1 OS=Xenopus laevis OX=8355 GN=furin PE=2 SV=1
Q28193	Furin OS=Bos taurus OX=9913 GN=FURIN PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00082 all species →	Peptidase_S8	Subtilase family	Domain	Interproscan
PF01483 all species →	P_proprotein	Proprotein convertase P-domain	Family	Interproscan
PF00353 all species →	HemolysinCabind	RTX calcium-binding nonapeptide repeat (4 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000209 all species →	Domain	Peptidase S8/S53 domain	Interproscan
IPR036852 all species →	Homologous_superfamily	Peptidase S8/S53 domain superfamily	Interproscan
IPR002884 all species →	Domain	P domain	Interproscan
IPR011049 all species →	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR023828 all species →	Active_site	Peptidase S8, subtilisin, Ser-active site	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR034182 all species →	Domain	Kexin/furin catalytic domain	Interproscan
IPR001343 all species →	Repeat	RTX calcium-binding nonapeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42884 all species →	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00001.G51865.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →