Genomic Location: HOLI00001:3665408...3666478
NR annotation: WP_136474656.1, amino acid ABC transporter permease [Pseudomonas sp. DG56-2]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g51879.t1 |
| Transcript |
| HOLI00001.g51879.t1 |
| Protein |
| HOLI00001.G51879 |
| UniProt accession | Description |
|---|---|
| P45768 | Inner membrane amino-acid ABC transporter permease protein YhdY OS=Escherichia coli (strain K12) OX=83333 GN=yhdY PE=1 SV=2 |
| Q52814 | General L-amino acid transport system permease protein AapM OS=Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841) OX=216596 GN=aapM PE=3 SV=1 |
| Q52665 | Glutamate/glutamine/aspartate/asparagine transport system permease protein BztC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=bztC PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00528 all species → | BPD_transp_1 | Binding-protein-dependent transport system inner membrane component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000515 all species → | Domain | ABC transporter type 1, transmembrane domain MetI-like | Interproscan |
| IPR043429 all species → | Family | ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like | Interproscan |
| IPR010065 all species → | Domain | Amino acid ABC transporter, permease protein, 3-TM domain | Interproscan |
| IPR035906 all species → | Homologous_superfamily | MetI-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30614 all species → | MEMBRANE COMPONENT OF AMINO ACID ABC TRANSPORTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006865 all species → | Biological Process | amino acid transport | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0043190 all species → | Cellular Component | ATP-binding cassette (ABC) transporter complex | Interproscan |
| GO:0071705 all species → | Biological Process | nitrogen compound transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09971 | aapM, bztC; general L-amino acid transport system permease protein | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
