Genomic Location: HOLI00001:3820664...3837468
NR annotation: WP_042127475.1, autotransporter-associated beta strand repeat-containing protein [Pseudomonas japonica]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g52007.t1 |
| Transcript |
| HOLI00001.g52007.t1 |
| Protein |
| HOLI00001.G52007 |
| UniProt accession | Description |
|---|---|
| A0A0H3GGE2 | Adhesin BmaC autotransporter OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=bmaC PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12951 all species → | PATR | Passenger-associated-transport-repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005546 all species → | Domain | Autotransporter beta-domain | Interproscan |
| IPR011050 all species → | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR013425 all species → | Repeat | Autotransporter-associated beta strand repeat | Interproscan |
| IPR051551 all species → | Family | Bacterial autotransporter adhesion | Interproscan |
| IPR012332 all species → | Homologous_superfamily | Autotransporter, pectate lyase C-like domain superfamily | Interproscan |
| IPR036709 all species → | Homologous_superfamily | Autotransporter beta-domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR35037 all species → | C-TERMINAL REGION OF AIDA-LIKE PROTEIN | Interproscan |
HOLI00001.G52007 in Hydra oligactis.| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19231 | bmaC; fibronectin-binding autotransporter adhesin | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
