Genomic Location: HOLI00001:3999818...4003039
NR annotation: WP_175651981.1, carbamoyl-phosphate synthase large subunit [Pseudomonas sp. Marseille-P9899]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g52130.t1 |
| Transcript |
| HOLI00001.g52130.t1 |
| Protein |
| HOLI00001.G52130 |
| UniProt accession | Description |
|---|---|
| Q88DU6 | Carbamoyl phosphate synthase large chain OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=carB PE=3 SV=2 |
| Q87WP4 | Carbamoyl phosphate synthase large chain OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=carB PE=3 SV=1 |
| P38100 | Carbamoyl phosphate synthase large chain OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=carB PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001105 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02142 all species → | MGS | MGS-like domain | Domain | Interproscan |
| PF02787 all species → | CPSase_L_D3 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain | Domain | Interproscan |
| PF02786 all species → | CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005479 all species → | Domain | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain | Interproscan |
| IPR033937 all species → | Domain | Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain | Interproscan |
| IPR011607 all species → | Domain | Methylglyoxal synthase-like domain | Interproscan |
| IPR036914 all species → | Homologous_superfamily | Methylglyoxal synthase-like domain superfamily | Interproscan |
| IPR005480 all species → | Domain | Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | Interproscan |
| IPR036897 all species → | Homologous_superfamily | Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily | Interproscan |
| IPR005483 all species → | Domain | Carbamoyl-phosphate synthase large subunit, CPSase domain | Interproscan |
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR016185 all species → | Homologous_superfamily | Pre-ATP-grasp domain superfamily | Interproscan |
| IPR006275 all species → | Family | Carbamoyl-phosphate synthase, large subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11405 all species → | CARBAMOYLTRANSFERASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006807 all species → | Biological Process | obsolete nitrogen compound metabolic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0004088 all species → | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006541 all species → | Biological Process | glutamine metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01955 | carB, CPA2; carbamoyl-phosphate synthase large subunit | EC:6.3.5.5 | Alanine, aspartate and glutamate metabolism | ko00250 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
