Genomic Location: HOLI00001:4017900...4019060
NR annotation: WP_095159717.1, MULTISPECIES: FMN-dependent L-lactate dehydrogenase LldD [Pseudomonas]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g52145.t1 |
| Transcript |
| HOLI00001.g52145.t1 |
| Protein |
| HOLI00001.G52145 |
| UniProt accession | Description |
|---|---|
| Q1IF69 | L-lactate dehydrogenase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=lldD PE=3 SV=1 |
| B0KIT4 | L-lactate dehydrogenase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=lldD PE=3 SV=1 |
| A5W9B2 | L-lactate dehydrogenase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=lldD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0024600 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01070 all species → | FMN_dh | FMN-dependent dehydrogenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012133 all species → | Family | Alpha-hydroxy acid dehydrogenase, FMN-dependent | Interproscan |
| IPR008259 all species → | Active_site | FMN-dependent alpha-hydroxy acid dehydrogenase, active site | Interproscan |
| IPR037396 all species → | Domain | FMN hydroxy acid dehydrogenase domain | Interproscan |
| IPR020920 all species → | Family | L-lactate dehydrogenase, bacterial | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR000262 all species → | Domain | FMN-dependent dehydrogenase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10578 all species → | S -2-HYDROXY-ACID OXIDASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0010181 all species → | Molecular Function | FMN binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0004457 all species → | Molecular Function | lactate dehydrogenase activity | Interproscan |
| GO:0006089 all species → | Biological Process | lactate metabolic process | Interproscan |
| GO:0004459 all species → | Molecular Function | L-lactate dehydrogenase activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0019516 all species → | Biological Process | obsolete lactate oxidation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00101 | lldD; L-lactate dehydrogenase (cytochrome) | EC:1.1.2.3 | Pyruvate metabolism | ko00620 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
