Detailed information of HOLI00001.G52557 in Hydra oligactis

Genomic Location: HOLI00001:4525332...4526396
NR annotation: WP_093377152.1, MULTISPECIES: uroporphyrinogen decarboxylase [unclassified Pseudomonas]
Species abbreviation HOLIG · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1IGA3Uroporphyrinogen decarboxylase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=hemE PE=3 SV=1
A5WAA7Uroporphyrinogen decarboxylase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=hemE PE=3 SV=1
Q88CV6Uroporphyrinogen decarboxylase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=hemE PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005584 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01208
all species →		URO-DUroporphyrinogen decarboxylase (URO-D)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038071
all species →		Homologous_superfamilyUROD/MetE-like superfamilyInterproscan
IPR006361
all species →		FamilyUroporphyrinogen decarboxylase HemEInterproscan
IPR000257
all species →		DomainUroporphyrinogen decarboxylase (URO-D)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21091
all species →		METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004853
all species →		Molecular Functionuroporphyrinogen decarboxylase activityInterproscan
GO:0006779
all species →		Biological Processporphyrin-containing compound biosynthetic processInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006783
all species →		Biological Processheme biosynthetic processInterproscan
GO:0019353
all species →		Biological Processprotoporphyrinogen IX biosynthetic process from glutamateInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01599hemE, UROD; uroporphyrinogen decarboxylaseEC:4.1.1.37
Porphyrin metabolismko00860deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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