Genomic Location: HOLI00001:4814357...4816066
NR annotation: WP_175652533.1, ATP-binding protein [Pseudomonas sp. Marseille-P9899]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g52770.t1 |
| Transcript |
| HOLI00001.g52770.t1 |
| Protein |
| HOLI00001.G52770 |
| UniProt accession | Description |
|---|---|
| O34206 | Alginate biosynthesis sensor protein KinB OS=Pseudomonas aeruginosa OX=287 GN=kinB PE=1 SV=1 |
| P20169 | Drug sensory protein A OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=dspA PE=3 SV=2 |
| Q1XD95 | Uncharacterized sensor-like histidine kinase ycf26 OS=Pyropia yezoensis OX=2788 GN=ycf26 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007005 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02518 all species → | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| PF16767 all species → | KinB_sensor | Sensor domain of alginate biosynthesis sensor protein KinB | Family | Interproscan |
| PF00672 all species → | HAMP | HAMP domain | Domain | Interproscan |
| PF00512 all species → | HisKA | His Kinase A (phospho-acceptor) domain | Domain | Interproscan |
| PF08448 all species → | PAS_4 | PAS fold | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000014 all species → | Domain | PAS domain | Interproscan |
| IPR003660 all species → | Domain | HAMP domain | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR003661 all species → | Domain | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain | Interproscan |
| IPR036097 all species → | Homologous_superfamily | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Interproscan |
| IPR004358 all species → | Domain | Signal transduction histidine kinase-related protein, C-terminal | Interproscan |
| IPR050980 all species → | Family | Two-component sensor histidine kinase | Interproscan |
| IPR035965 all species → | Homologous_superfamily | PAS domain superfamily | Interproscan |
| IPR005467 all species → | Domain | Histidine kinase domain | Interproscan |
| IPR003594 all species → | Domain | Histidine kinase/HSP90-like ATPase | Interproscan |
| IPR031909 all species → | Domain | Alginate biosynthesis sensor protein KinB, sensor domain | Interproscan |
| IPR038320 all species → | Homologous_superfamily | KinB, N-terminal domain superfamily | Interproscan |
| IPR013656 all species → | Domain | PAS fold-4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44936 all species → | SENSOR PROTEIN CREC | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0000155 all species → | Molecular Function | phosphorelay sensor kinase activity | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
HOLI00001.G52770.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
