Detailed information of HOLI00001.G52931 in Hydra oligactis

Genomic Location: HOLI00001:5014948...5016531
NR annotation: WP_110969800.1, phosphate ABC transporter permease PstA [Pseudomonas huaxiensis]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P9WG10Phosphate transport system permease protein PstA 1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=pstA1 PE=3 SV=1
P9WG11Phosphate transport system permease protein PstA 1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pstA1 PE=2 SV=1
Q50097Phosphate transport system permease protein PstA OS=Mycobacterium leprae (strain TN) OX=272631 GN=pstA PE=3 SV=1
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00528
all species →		BPD_transp_1Binding-protein-dependent transport system inner membrane componentFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000515
all species →		DomainABC transporter type 1, transmembrane domain MetI-likeInterproscan
IPR035906
all species →		Homologous_superfamilyMetI-like superfamilyInterproscan
IPR005672
all species →		FamilyPhosphate transport system permease protein PstAInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43470
all species →		PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0005315
all species →		Molecular Functionphosphate transmembrane transporter activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0035435
all species →		Biological Processphosphate ion transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02038pstA; phosphate transport system permease protein-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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