Genomic Location: HOLI00001:5083142...5084215
NR annotation: WP_262154991.1, MULTISPECIES: alanine racemase [unclassified Pseudomonas]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g52994.t1 |
| Transcript |
| HOLI00001.g52994.t1 |
| Protein |
| HOLI00001.G52994 |
| UniProt accession | Description |
|---|---|
| B9WZ64 | Alanine racemase OS=Pseudomonas taetrolens OX=47884 GN=alr PE=1 SV=1 |
| Q88CB2 | Alanine racemase, catabolic OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=dadX PE=1 SV=1 |
| Q1I2V7 | Alanine racemase OS=Pseudomonas entomophila (strain L48) OX=384676 GN=alr PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012175 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01168 all species → | Ala_racemase_N | Alanine racemase, N-terminal domain | Domain | Interproscan |
| PF00842 all species → | Ala_racemase_C | Alanine racemase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029066 all species → | Homologous_superfamily | PLP-binding barrel | Interproscan |
| IPR000821 all species → | Family | Alanine racemase | Interproscan |
| IPR011079 all species → | Domain | Alanine racemase, C-terminal | Interproscan |
| IPR009006 all species → | Homologous_superfamily | Alanine racemase/group IV decarboxylase, C-terminal | Interproscan |
| IPR001608 all species → | Domain | Alanine racemase, N-terminal | Interproscan |
| IPR020622 all species → | Binding_site | Alanine racemase, pyridoxal-phosphate attachment site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30511 all species → | ALANINE RACEMASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006522 all species → | Biological Process | alanine metabolic process | Interproscan |
| GO:0008784 all species → | Molecular Function | alanine racemase activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0030632 all species → | Biological Process | D-alanine biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01775 | alr; alanine racemase | EC:5.1.1.1 | Peptidoglycan biosynthesis and degradation proteins | ko01011 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
