Genomic Location: HOLI00001:5440965...5446984
NR annotation: GEY66986.1, sulfoquinovosyl transferase SQD2-like [Tanacetum cinerariifolium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g53297.t1 |
| Transcript |
| HOLI00001.g53297.t1 |
| Protein |
| HOLI00001.G53297 |
| UniProt accession | Description |
|---|---|
| P74178 | Uncharacterized protein sll1178 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll1178 PE=3 SV=1 |
| Q70IY1 | nebramycin 5' synthase OS=Streptoalloteichus tenebrarius (strain ATCC 17920 / DSM 40477 / JCM 4838 / CBS 697.72 / NBRC 16177 / NCIMB 11028 / NRRL B-12390 / A12253. 1 / ISP 5477) OX=1933 GN=tobZ PE=1 SV=1 |
| P55474 | Nodulation protein NolNO OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=nolO PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014808 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13524 all species → | Glyco_trans_1_2 | Glycosyl transferases group 1 | Domain | Interproscan |
| PF02585 all species → | PIG-L | GlcNAc-PI de-N-acetylase | Family | Interproscan |
| PF07395 all species → | Mig-14 | Mig-14 | Family | Interproscan |
| PF02543 all species → | Carbam_trans_N | Carbamoyltransferase N-terminus | Domain | Interproscan |
| PF00534 all species → | Glycos_transf_1 | Glycosyl transferases group 1 | Family | Interproscan |
| PF16861 all species → | Carbam_trans_C | Carbamoyltransferase C-terminus | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016181 all species → | Homologous_superfamily | Acyl-CoA N-acyltransferase | Interproscan |
| IPR003737 all species → | Family | N-acetylglucosaminyl phosphatidylinositol deacetylase-related | Interproscan |
| IPR043129 all species → | Homologous_superfamily | ATPase, nucleotide binding domain | Interproscan |
| IPR038152 all species → | Homologous_superfamily | Carbamoyltransferase, C-terminal domain superfamily | Interproscan |
| IPR051338 all species → | Family | NodU/CmcH Carbamoyltransferase | Interproscan |
| IPR009977 all species → | Family | Mig-14 | Interproscan |
| IPR024078 all species → | Homologous_superfamily | Putative deacetylase LmbE-like domain superfamily | Interproscan |
| IPR003696 all species → | Domain | Carbamoyltransferase | Interproscan |
| IPR001296 all species → | Domain | Glycosyl transferase, family 1 | Interproscan |
| IPR031730 all species → | Domain | Carbamoyltransferase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR34847 all species → | NODULATION PROTEIN U | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0016757 all species → | Molecular Function | glycosyltransferase activity | Interproscan |
HOLI00001.G53297.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
