Genomic Location: HOLI00001:6285927...6287246
NR annotation: WP_095154186.1, MULTISPECIES: homoserine dehydrogenase [unclassified Pseudomonas]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00001.g53926.t1 |
| Transcript |
| HOLI00001.g53926.t1 |
| Protein |
| HOLI00001.G53926 |
| UniProt accession | Description |
|---|---|
| P29365 | Homoserine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=hom PE=3 SV=2 |
| Q5F8J4 | Homoserine dehydrogenase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) OX=242231 GN=NGO_0779 PE=1 SV=1 |
| P37144 | Homoserine dehydrogenase OS=Methylobacillus glycogenes OX=406 GN=hom PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0025649 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03447 all species → | NAD_binding_3 | Homoserine dehydrogenase, NAD binding domain | Domain | Interproscan |
| PF01842 all species → | ACT | ACT domain | Domain | Interproscan |
| PF00742 all species → | Homoserine_dh | Homoserine dehydrogenase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR016204 all species → | Family | Homoserine dehydrogenase | Interproscan |
| IPR005106 all species → | Domain | Aspartate/homoserine dehydrogenase, NAD-binding | Interproscan |
| IPR045865 all species → | Homologous_superfamily | ACT-like domain | Interproscan |
| IPR002912 all species → | Domain | ACT domain | Interproscan |
| IPR001342 all species → | Domain | Homoserine dehydrogenase, catalytic | Interproscan |
| IPR019811 all species → | Conserved_site | Homoserine dehydrogenase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43331 all species → | HOMOSERINE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004412 all species → | Molecular Function | homoserine dehydrogenase activity | Interproscan |
| GO:0009088 all species → | Biological Process | threonine biosynthetic process | Interproscan |
| GO:0006520 all species → | Biological Process | amino acid metabolic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0050661 all species → | Molecular Function | NADP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00003 | hom; homoserine dehydrogenase | EC:1.1.1.3 | Lysine biosynthesis | ko00300 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
