Gene detail

Detailed information of HOLI00002.G19012 in Hydra oligactis

Genomic Location: HOLI00002:2064829...2068339
NR annotation: MBK8367434.1, SpoIIE family protein phosphatase [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00002.g19012.t1

ATGATCAGACAGGTATTCTTTTGCGTCTATGCCTTCCTCTTCTCTTCCAGACGCCACCGGCTTTTTGTGGGTAGCCACCAACAACGGGCTCTACAAGTTCGATGGGCGCTCGGGTACAGCCGTGGAACCTTTTTCAAAAAAGAGATCACCACCGTATTCATTGCCCGAGACGGCGTGGTATGGACCGGTACGAAGGGCGGAAAGGTCTTTTCACTGGACCGCGGCCACATGGATTCGCTGCTTCTGGATGACAATGAAGACAAGGTGACCTCCTTCTGCGAACTGGGCGGCAGCCTCTACATCGGCACCTATGGTAAAGGGCTTTACCGCTATGCCGGTAAATCTCAAAAGCCGGCCCATTATACGCGCGAAAACGGCCTCAGCGATGATGTGATCTACGCCCTGACGGGCGATGGAAAGCAACACCTCTGGTGCAGCACCGATGGCGGCGTCACACAGCTCGATGTTTCCAAAAGCGAGCCGGCATTTAAAATCATTTCCGACCGCAGCGGCCTGCCCGATAACATTGTCAGGAATGTGAGCATCTGCGACGAGCGCCTGCTTATATCCATGCAGGATTCGGGGTGTGCTACTATAACCTCAAAAGCAGCCGCATCGAGCGGATTCCTTTTTTCTATAACTGGTCGCTGGGCACGCAAGCTCATCCAGGGTACTTCTATCAATACTGTATTTTTTGATAAGGCCAACCAGGTCTGGACGGGCTCCAAAAAAGGCCTGAGCCAGCTCTATGGCCGCCGCTACGACTTTATCAATAACGCCAAAGGCCTGACGGACGACAAGATCCTGGCTCTGGCTACGGACAATGATCACTCGATCTGGATCGGTACCACGATGGGTATATCAAGAGTGATGAGGACCGGCGAAGGGCGTTATGTGATCGAAAAGATCCAGGATCTTACCAAATATACGATCTCCTGCGCGGCCAAATCGCCGGACGGCGATATCTGGTTCGGAACCTACGGCAATGGGATTATTGTACTGAGCGCCGAAAATCAGAAAAGTATCATCATCAACTCAAAAGATGATGCGCTGCCCAATGACAACATCTCCACGATTCATTTTAGCGGCGCGAATACCGTTTATATTTCCACGCTTGGCGGAGGCCTCACCAAAGCCACGATCGACCGCGACGGCGCGCGCAAGAGCTTTAAGGTGGAGCATACCTACACACAGAGCGAAGGCCTGGGGAGCGATTATGTGTATTCGGCCATTACCGACGATGCGGGCAAGCTCTACGTGGCGACCGATGGCGGCGGTCTGCAGGTATTTGAGAACAACACCTTCAACAGCCTGACCAAAACCTATAAGCTCAGCTCGCAAACGGCTTTCTCGCTTTGTAAGGACCAGTACAACCAGATCTGGGCCACCACCAATGCCGACGGCATCATTAAATACGACGGGAAAACGCTCACGGTCATTAATGCCCAAAACGGGTTGAGGGATCTGCAACCGCAGCAGCTGGTCGCCTTCAACGATATGGTTTTTGCCATCAATGATAAAGGCATCGATAAGATCCAGGCCAAAACAAATGCCGTCACCTATTACGACCTGTTCGAGGGCGACCTGGAGCCCAACCTCAATGCCGTGTTTATCCAGGGGAACATCATTTACAGCGGCACCAACAACGGCGTGCTGGTATACAGGGCCAACCGCATTGCCCTCGATTCGGTGAAGCCCGGCGTTTTCATCAAATCCCTGCAGGTAAACTATAAAACCATTCCACTCGATTCCCTTATCGAGTTCCGTTACAACCAGAACAATATGGCCTTCGATTTCAAAGGGCTGTGGCTTAAAAATCCCGACAAGCTTTCCTTCAGGTACCAGCTCAAAGGCTTTGATGAGACCTGGAATTATTCGAACGAAGCGAAGCTCGTGAATTACAATAACCTTTCGCCAGGCGCTTATGAGTTCGTTGTACAAGCGAGAAACGAGGAAGAGGTATGGAGCGACGAGGCGGGTTATTCCTTTTCGATCCTCACCCCCATCTGGAAACGCTGGTGGTTCTGGCTGCTGGTATTGACCGTTGGCTCTTTCCTGATTTATTCGTTTGTCAAATACCGCTTAAGGTCCTTACAAAAAGAGAACCTCTTGCTGGAACAGCGGGTCAATGAGCGCACCTCGGAAATTGAGCAACAAGCCAGGATCATTGAAAGCAAAAATGTGGCCCTCGAGCAATTGTCGCTGGTGGCCAGCCGCACTGATAACGTGGTACTGATCCTCGACCCGGAAGGCCGGCTGGAGTATGTGAACGAGAGCTTTGTGAAGCTTAACCGGATCACACTCGAAGAGCTGAAGCGCAATGTGGGGGAAACCATCTTCGAGATCAGTAACTACCCCGACATTAAAACGATTGTAGCGGAAGCGGTGCATTATAAAAAATCGGTGAACTATGAGGCGCTCAACAGGCTTGATGACGGCAGCGAAGTGTGGGAGTCCTCCACCCTCACGCCGATCTTCGATGAGGCCGGCATCCTGAAAAAACTCATCATCATCGACACCGATGTGACCGAACGCAAAAAACAGGAACAGATCATCTACCAGAAGAATAAGGACATTACCGATAGTATTTCCTATGCGCGTAAGATCCAGCACGCCATTTTACCACACGATGAGCTGATCCGCCGTTACCTGCCCCAGTCTTTTATCCTGTACCTTACCAAAGATATTGTAAGCGGCGACTTCTACTGGTTTACGCACTTCAAGGGTATCAGCATTATCGCAGCCGTCGATTGCACCGGCCATGGTGTTCCGGGAGCTTTCATGAGCCTAATTGGCTATAACATTCTCAACCGCATTGTGAACGAGCAAAAAATTACCGATCCCAGGGAGATCCTGATGGAGCTTAACCAGGGCGTATTGGAAGTACTCTACAAAAACGAATCGGAGTCGAAAGACGGCATGGACATTGCCATTTGCCGCATCGACCATGCCAACCGAACCGTGGACTTTGCCGGAGCCATGAGGCCATTGTGGGTAGTGAACAAAGGTGTGCTGACCGAGATCAAAGGTGATAAGTTCCCGATCGGTACCAGGCAGGCCGACCGCGACGATACCATTGCCTATACCACGCACACCATCCATGCAGCGGAGGACGACACCTTCTATATTTTTACCGACGGTTATGCGGATCAGTTCGGCGGGGAAAACAATAAGAAATTCAGTACCAGGCGATTTAAAGAGCTTCTTATAAAAAATAATCCGGAAAGCTTCGCCATACAGGAAAATAATATTAAACTTGAGCATAACCAATGGAAAGGAAATCACGAGCAGATAGATGATATCCTGGTTATTGGTTTCAAACTATAA

Transcript

HOLI00002.g19012.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013646 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08448 all species →	PAS_4	PAS fold	Domain	Interproscan
PF07495 all species →	Y_Y_Y	Y_Y_Y domain	Domain	Interproscan
PF07228 all species →	SpoIIE	Stage II sporulation protein E (SpoIIE)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036457 all species →	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR013656 all species →	Domain	PAS fold-4	Interproscan
IPR011123 all species →	Domain	Two component regulator three Y	Interproscan
IPR000700 all species →	Domain	PAS-associated, C-terminal	Interproscan
IPR001932 all species →	Domain	PPM-type phosphatase-like domain	Interproscan
IPR052016 all species →	Family	Bacterial Sigma Factor Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43156 all species →	STAGE II SPORULATION PROTEIN E-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00002.G19012.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.