Gene detail

Detailed information of HOLI00002.G19077 in Hydra oligactis

Genomic Location: HOLI00002:2141581...2143271
NR annotation: MCD6018927.1, UDP-N-acetyl-D-galactosamine dehydrogenase [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9RHD7	UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa OX=287 GN=wbpO PE=1 SV=1
P39861	Protein CapL OS=Staphylococcus aureus OX=1280 GN=capL PE=3 SV=1
Q04972	UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Salmonella typhi OX=90370 GN=wcdA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0017058 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03720 all species →	UDPG_MGDP_dh_C	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	Domain	Interproscan
PF00984 all species →	UDPG_MGDP_dh	UDP-glucose/GDP-mannose dehydrogenase family, central domain	Domain	Interproscan
PF03721 all species →	UDPG_MGDP_dh_N	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017476 all species →	Family	UDP-glucose/GDP-mannose dehydrogenase	Interproscan
IPR014027 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	Interproscan
IPR014026 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	Interproscan
IPR001732 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	Interproscan
IPR028359 all species →	Family	UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036220 all species →	Homologous_superfamily	UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43491 all species →	UDP-N-ACETYL-D-MANNOSAMINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0000271 all species →	Biological Process	polysaccharide biosynthetic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02474	wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase	EC:1.1.1.136 EC:1.1.1.-	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.