Gene detail

Detailed information of HOLI00002.G19081 in Hydra oligactis

Genomic Location: HOLI00002:2145292...2145681
NR annotation: MBA4240491.1, ribosomal large subunit pseudouridine synthase F [Sphingobacteriaceae bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8Z1V3	Dual-specificity RNA pseudouridine synthase RluF OS=Salmonella typhi OX=90370 GN=rluF PE=3 SV=1
Q8ZKL1	Dual-specificity RNA pseudouridine synthase RluF OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rluF PE=3 SV=1
P32684	Dual-specificity RNA pseudouridine synthase RluF OS=Escherichia coli (strain K12) OX=83333 GN=rluF PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013287 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020094 all species →	Homologous_superfamily	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	Interproscan
IPR000748 all species →	Family	Pseudouridine synthase, RsuA/RluB/E/F	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR042092 all species →	Homologous_superfamily	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	Interproscan
IPR050343 all species →	Family	Ribosomal RNA Pseudouridine Synthase RsuA	Interproscan
IPR018496 all species →	Conserved_site	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	Interproscan
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47683 all species →	PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0016866 all species →	Molecular Function	intramolecular transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06182	rluF; 23S rRNA pseudouridine2604 synthase	EC:5.4.99.21	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.