Gene detail

Detailed information of HOLI00002.G19149 in Hydra oligactis

Genomic Location: HOLI00002:2241613...2242886
NR annotation: MBI3520141.1, replication-associated recombination protein A [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P39918	Replication-associated recombination protein A OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=rarA PE=3 SV=3
P45262	Replication-associated recombination protein A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rarA PE=3 SV=1
O13984	ATPase WRNIP1 homolog C26H5.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC26H5.02c PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005280 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12002 all species →	MgsA_C	MgsA AAA+ ATPase C terminal	Domain	Interproscan
PF16193 all species →	AAA_assoc_2	AAA C-terminal domain	Family	Interproscan
PF05496 all species →	RuvB_N	Holliday junction DNA helicase RuvB P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051314 all species →	Family	AAA ATPase RarA/MGS1/WRNIP1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR021886 all species →	Domain	MgsA AAA+ ATPase C-terminal	Interproscan
IPR032423 all species →	Domain	AAA C-terminal domain	Interproscan
IPR008824 all species →	Domain	RuvB-like P-loop domain	Interproscan
IPR008921 all species →	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13779 all species →	WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000731 all species →	Biological Process	DNA synthesis involved in DNA repair	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0008047 all species →	Molecular Function	enzyme activator activity	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0009378 all species →	Molecular Function	four-way junction helicase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07478	ycaJ; putative ATPase	-	Replication and repair	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.