Gene detail

Detailed information of HOLI00002.G19185 in Hydra oligactis

Genomic Location: HOLI00002:2281327...2284257
NR annotation: MBK6986542.1, TonB-dependent receptor [Bacteroidota bacterium]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00002.g19185.t1

ATGGTTAAATTTGCTCCCTATCAAAAAAATAACATGATTCGTTCGATTCTTACTTTTTGTTTACTGCTGGCCCTCGGCAGCGCATTTGCTCAATACGGAACCATCCGTGGTTTTGTGTATAACAAAGCCAACGGTGAGCCGGTTCCATTCTCCAATATCTACCTCAAGGGCACCACCACCGGCGCCTCTTCGGATCCCAACGGTTTCTTCTCCATCAATAAGGTGAAGCCTGGAACTTATACCTTGCTGGTAACCAACCTTGAATTCGATACCATCTCCGAAACCATTACCATCAAAGCGGAGCAGATCCTCAATAAGAAATTCTTTTCCACCAAAGGCGGTGTGATCCTCAATACCGTGGAAGTAACGGCCGCGCAAACCGAAAAGATCGAGAACCCCAACGTGGCGGTGCAGACCATCGATCCGGTGGCCATCAACAAGCTGCCAAGCGTAGGTGAGCCCGATCTGGCCCAGTACCTGCAGGTATTGCCGGGTGTTGTGTTTACCGGCGACCAGGGTGGGCAGCTCTACATCCGCGGTGGCTTACCGATCCAGAACAAGGTATTGCTCGACGGGATGGTGATCTACAATCCCTTTCACTCCATCGGTTTGTTCTCGGTGTTTGATAACGACATCATGCGTAGCGCCGATGTATACAGCGCCGGCTTTGGCGCCGAATACGGCGGACGTACTTCCGCCATCATGGACATTACCACCCGCGACGGGAATAAAAAACGCCTCTCCGGAAAAGTGTCGGCTTCTACCTTTGGCGCAAAAGCCACGCTGGAAGGGCCACTCAAAAAGCTGAAGGAAGACGGTAAGGGAAGCGCATCTTTCCTGCTTTCCGGCAAGACTTCTTACCTGCCGCAAACTTCCAAAGTGTTGTATCCGTACGCCAATAAAGATGGCCTGCCGTTCTACTATACCGATCTCTACGGTAAGGTATCCATCAATGCCAACAACGGCAGCAAGGTAAACCTCTTCGGTTATAACTTCAACGATAAGGTGGTGTATAAAGACCTGGCCAAATTCAACTGGACATCCTTTGGCGGCGGCAGTAACTTCATCCTGATTCCGCAAAGCTCGACCTTGCTCATCGAGGGGAACTTTGCCTATTCGCAATACAAGATCAATTACGAAGGCGCCGTGCCCGAAGATAACAAATCAAGCACTGTGGGCGGCTTCAACGGAGGCTTCAACTTCCTGAAATACTTTGGCCGCGATGAATTGAAATATGGGTTTGAGCTGGTGGGAACTAATACAGATTACTCCATTCAAACGCCTTTGCTGACCAAGGAAGTGTCTTACCAGAAAAACTCCATCGAGCTGGCAGGGCATGTGAAATACCGCTACCTGACCCGCCGCAAGTACCTGGTGCTGGAGCCGAGCTTCCGCCTGCAGTATTATGCTACCTTCAACAACTTATCGCCTGAGCCGCGTATCCAGGGTAAAATCAACATCACCCGCAAGTTCCGTTTCAAATTCGCAGCCGGCTTATACAGCCAGAGCCTCATGAGCGCCAGCTCCGACAGGGATGTGGTGAACCTCTTCTATGGCTTCATCAACGGGCCGGAGAACCTGCCTGCCACCTATAAGGATAAAGACAATAAAACGGTGGATACCAAAGGCGTGATCCAGAAAGCGCAGCACTATGTGGGTGGCTTCGAGATCGACGTCCTGAAATACTTCGAGTTCCAGGTAGAGGCTTACCGCAAGTACTTTACACAAATGGCCAGCGTGAACCGCGACAAGCTGTTTGAAGATACGCCGGAGAACCAATCGAAACCGGAGGCTAACCGTAAGGACTTCATCATGGAGCAGGGGTGGAGGCATAATGTGAACCTCGTAGGTACTTATACTTTTGGTAAAAAACGTAACCTCGACCTGAGCGTTCGCTGGAACTTCGGTTCGGGCTTCCCGTTCACGCCCACAGCCGGCTACTACCCGCAGGTGGATTTCGGCAACAACTTCAATGCGCCGTATGCCACGACCAATGCTAACCTGGGCTATGTGCCGGGCGATTACAACTCACGCCGCTTACCGGATTACCACCGTCTCGACATTAGCATCAAATGGCTCTACAATACCAGCGAGCATACCAGGCTGGAAGTCTATACCAAAACAGGTGATAAGGGGCAAACGTCCCTGATCGGTGGGACGCGCATCCCTAAGTTCGATATCCGTATCGAGGCCTATGGGACGGTGGACGAGCTTAACTCATACATCGGGCTGATCCGCGACCAAGCCATCGACGCGCATGCGCGGGAGATCCTGATCGAAATACAGGACAGGCTGTTTACCATTGGCTCGCTGCTGGCGGCCGATCCGGTGAAAAACAAAATGACGCTGCCGCAGATTGCAGAAGGCGACATCAAGCTGCTGGAGGAGGAAATGGACAACATGGATAAGTCCCTGCCCGAAATGAAATCCTTCGTCTTGCCGGGTGGACACACCACGGTATCGTTTTGCCACATCGCCCGCTGCGTGTGCCGCAGGGCCGAGCGCTGTACGCTAAAGCTGAATGAGCAGCAGCCATTGAACGAGCTCATCTACAAATACCTGAATCGCCTGTCGGATTACCTCTTTGTGCTCTCCCGCAAGCTGACGATGGATCTGAACGCCACGGAAACTCCCTGGAAACCGAGGGTTTAA

Transcript

HOLI00002.g19185.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O34899	Corrinoid adenosyltransferase OS=Bacillus subtilis (strain 168) OX=224308 GN=yvqK PE=1 SV=2
P45515	Corrinoid adenosyltransferase OS=Citrobacter freundii OX=546 PE=3 SV=1
Q8ZNR5	Corrinoid adenosyltransferase PduO OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=pduO PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07715 all species →	Plug	TonB-dependent Receptor Plug Domain	Domain	Interproscan
PF01923 all species →	Cob_adeno_trans	Cobalamin adenosyltransferase	Domain	Interproscan
PF13715 all species →	CarbopepD_reg_2	CarboxypepD_reg-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029499 all species →	Family	Corrinoid adenosyltransferase, PduO-type	Interproscan
IPR036451 all species →	Homologous_superfamily	Cobalamin adenosyltransferase-like superfamily	Interproscan
IPR037066 all species →	Homologous_superfamily	TonB-dependent receptor, plug domain superfamily	Interproscan
IPR012910 all species →	Domain	TonB-dependent receptor, plug domain	Interproscan
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR016030 all species →	Domain	Cobalamin adenosyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12213 all species →	CORRINOID ADENOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008817 all species →	Molecular Function	corrinoid adenosyltransferase activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00002.G19185.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.