Genomic Location: HOLI00002:2349626...2350345
NR annotation: MBK6986566.1, response regulator transcription factor [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g19248.t1 |
| Transcript |
| HOLI00002.g19248.t1 |
| Protein |
| HOLI00002.G19248 |
| UniProt accession | Description |
|---|---|
| Q9KU36 | Uncharacterized response regulatory protein VC_0693 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=VC_0693 PE=3 SV=1 |
| Q8DET1 | Uncharacterized response regulatory protein VV1_0503 OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=VV1_0503 PE=3 SV=1 |
| Q87S86 | Uncharacterized response regulatory protein VP0538 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP0538 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012334 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00072 all species → | Response_reg | Response regulator receiver domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039420 all species → | Family | Transcriptional regulatory protein WalR-like | Interproscan |
| IPR001789 all species → | Domain | Signal transduction response regulator, receiver domain | Interproscan |
| IPR011006 all species → | Homologous_superfamily | CheY-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48111 all species → | REGULATOR OF RPOS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000156 all species → | Molecular Function | phosphorelay response regulator activity | Interproscan |
| GO:0000976 all species → | Molecular Function | transcription cis-regulatory region binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0032993 all species → | Cellular Component | protein-DNA complex | Interproscan |
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
HOLI00002.G19248.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
