Genomic Location: HOLI00002:2381632...2384271
NR annotation: MCC6182491.1, valine--tRNA ligase [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g19281.t1 |
| Transcript |
| HOLI00002.g19281.t1 |
| Protein |
| HOLI00002.G19281 |
| UniProt accession | Description |
|---|---|
| A6LIG7 | Valine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=valS PE=3 SV=1 |
| A6L3G7 | Valine--tRNA ligase OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=valS PE=3 SV=1 |
| A0M5I5 | Valine--tRNA ligase OS=Christiangramia forsetii (strain DSM 17595 / CGMCC 1.15422 / KT0803) OX=411154 GN=valS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002985 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08264 all species → | Anticodon_1 | Anticodon-binding domain of tRNA ligase | Domain | Interproscan |
| PF10458 all species → | Val_tRNA-synt_C | Valyl tRNA synthetase tRNA binding arm | Domain | Interproscan |
| PF00133 all species → | tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009008 all species → | Homologous_superfamily | Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | Interproscan |
| IPR013155 all species → | Domain | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding | Interproscan |
| IPR002303 all species → | Family | Valine-tRNA ligase | Interproscan |
| IPR019499 all species → | Domain | Valyl-tRNA synthetase, tRNA-binding arm | Interproscan |
| IPR037118 all species → | Homologous_superfamily | Valyl-tRNA synthetase, tRNA-binding arm superfamily | Interproscan |
| IPR033705 all species → | Domain | Valyl tRNA synthetase, anticodon-binding domain | Interproscan |
| IPR001412 all species → | Conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR009080 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Interproscan |
| IPR010978 all species → | Homologous_superfamily | Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm | Interproscan |
| IPR002300 all species → | Domain | Aminoacyl-tRNA synthetase, class Ia | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11946 all species → | VALYL-TRNA SYNTHETASES | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0002161 all species → | Molecular Function | aminoacyl-tRNA editing activity | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004832 all species → | Molecular Function | valine-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006438 all species → | Biological Process | valyl-tRNA aminoacylation | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01873 | VARS, valS; valyl-tRNA synthetase | EC:6.1.1.9 | Transfer RNA biogenesis | ko03016 | deepkoala |
