Detailed information of HOLI00002.G19355 in Hydra oligactis

Genomic Location: HOLI00002:2467540...2468919
NR annotation: MCF8422929.1, pyridoxal-phosphate dependent enzyme [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C7M8J5Cysteate synthase OS=Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / CCUG 9716 / JCM 12966 / NCTC 12371 / SS31 / VPI 2845) OX=521097 GN=capA PE=1 SV=1
P9WP50Putative cystathionine beta-synthase MT1108 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=cbs PE=3 SV=1
P9WP51Probable cystathionine beta-synthase Rv1077 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=cbs PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004384 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00291
all species →		PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF00571
all species →		CBSCBS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001926
all species →		DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR001216
all species →		Binding_siteCysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment siteInterproscan
IPR050214
all species →		FamilyCysteine Synthase/Cystathionine Beta-SynthaseInterproscan
IPR000644
all species →		DomainCBS domainInterproscan
IPR036052
all species →		Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR046342
all species →		Homologous_superfamilyCBS domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10314
all species →		CYSTATHIONINE BETA-SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006535
all species →		Biological Processcysteine biosynthetic process from serineInterproscan
GO:0004124
all species →		Molecular Functioncysteine synthase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0019344
all species →		Biological Processcysteine biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01697CBS; cystathionine beta-synthaseEC:4.2.1.22
Cysteine and methionine metabolismko00270deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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