Genomic Location: HOLI00002:2474316...2481572
NR annotation: MBC7412664.1, hypothetical protein [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g19360.t1 |
| Transcript |
| HOLI00002.g19360.t1 |
| Protein |
| HOLI00002.G19360 |
| UniProt accession | Description |
|---|---|
| Q58863 | Uncharacterized protein MJ1468 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1468 PE=4 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18911 all species → | PKD_4 | PKD domain | Domain | Interproscan |
| PF13585 all species → | CHU_C | CHU_C Type IX secretion signal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029865 all species → | Family | Dyslexia-associated protein KIAA0319-like | Interproscan |
| IPR000601 all species → | Domain | PKD domain | Interproscan |
| IPR022409 all species → | Domain | PKD/Chitinase domain | Interproscan |
| IPR035986 all species → | Homologous_superfamily | PKD domain superfamily | Interproscan |
| IPR026341 all species → | Domain | T9SS type B sorting domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46182 all species → | FI19480P1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0001764 all species → | Biological Process | neuron migration | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0031410 all species → | Cellular Component | cytoplasmic vesicle | Interproscan |
HOLI00002.G19360.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
