Genomic Location: HOLI00002:2596359...2596952
NR annotation: MBI3520885.1, Holliday junction branch migration protein RuvA [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g19455.t1 |
| Transcript |
| HOLI00002.g19455.t1 |
| Protein |
| HOLI00002.G19455 |
| UniProt accession | Description |
|---|---|
| Q5L9Q7 | Holliday junction branch migration complex subunit RuvA OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=ruvA PE=3 SV=1 |
| Q64PZ9 | Holliday junction branch migration complex subunit RuvA OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=ruvA PE=3 SV=1 |
| Q8A6A7 | Holliday junction branch migration complex subunit RuvA OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=ruvA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0084620 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01330 all species → | RuvA_N | RuvA N terminal domain | Domain | Interproscan |
| PF14520 all species → | HHH_5 | Helix-hairpin-helix domain | Domain | Interproscan |
| PF07499 all species → | RuvA_C | RuvA, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR013849 all species → | Domain | DNA helicase, Holliday junction RuvA type, domain I, bacterial | Interproscan |
| IPR010994 all species → | Homologous_superfamily | RuvA domain 2-like | Interproscan |
| IPR036267 all species → | Homologous_superfamily | RuvA, C-terminal domain superfamily | Interproscan |
| IPR000085 all species → | Family | Holliday junction branch migration complex subunit RuvA | Interproscan |
| IPR003583 all species → | Domain | Helix-hairpin-helix DNA-binding motif, class 1 | Interproscan |
| IPR011114 all species → | Domain | Holliday junction DNA helicase RuvA, C-terminal | Interproscan |
HOLI00002.G19455 in Hydra oligactis.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0006310 all species → | Biological Process | DNA recombination | Interproscan |
| GO:0009378 all species → | Molecular Function | four-way junction helicase activity | Interproscan |
| GO:0003678 all species → | Molecular Function | DNA helicase activity | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0009379 all species → | Cellular Component | Holliday junction helicase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03550 | ruvA; holliday junction DNA helicase RuvA | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
