Gene detail

Detailed information of HOLI00002.G19486 in Hydra oligactis

Genomic Location: HOLI00002:2625669...2628261
NR annotation: MBK8368854.1, DNA gyrase subunit A [Bacteroidota bacterium]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00002.g19486.t1

ATGAGCGGAGAGAAAATCATTCCTATTAACATTGAAGAAGAAATGAAAACAGCCTACATCGATTATTCGATGTCGGTGATTGTATCCAGGGCCTTGCCTGATGTCAGAGACGGTTTAAAACCAGTACACCGCCGCGTCCTTTACGGGATGCTTGATCTCGGTGTTTTACACAATCGTCCTTACAAAAAATCGGCCCGTATTGTTGGGGAGGTTTTAGGAAAGTACCACCCGCATGGCGACTCTTCGGTGTATGATACCATGGTGCGTATGGCCCAGGAATGGAGCCTGCGTTACATGCTGGTAGACGGGCAGGGAAACTTCGGTTCGGTGGATGGCGATATGCCGGCCGCGATGCGTTACACCGAGGTGCGCTTCCGCAAGATCGCGGAAGAAATGATGGCAGACATCGAAAAGGATACGGTGGATTTCCGCCCGAACTTTGACGACTCTCTGACAGAACCTTCTGTGCTGCCTACACGTGTGCCACAATTATTGATGAATGGCGCTTCCGGTATTGCCGTAGGGATGGCAACCAACATGCCGCCTCACAACTTAACGGAATGTGTGAACGGGATCCTGGCCTACATCGATAACAACGATATTACGATCGATGAGCTGATGAAACATATCAAAGCGCCTGACTTCCCGACAGGCGGAACGATTTATGGCTACGAAGGTGTGAAGGAAGCATTTCACAACGGCCGCGGCCGTATTGTGATGCGTGCCAAAGCAAGCATCGAGCCTGTGAATAACCGCGAGCGGATCATTGTTACGGAAATCCCTTACCAGATCAACAAGGCGGATATGATCAAGCGCCAGTGGGAGCTGTGCAACGAAAAGAAAATTGAAGGAATTACCGAGATCCGCGACGAGAGTAACCGTGAGGGAATGCGCATCGTGTACGAGCTGCGTTCGGATGCGATCTCGAATGTGGTGTTGAATAATTTGTACAAATATTCGGCGCTGCAAACATCGTTCTCCGTGAATAATGTGGTGTTGGTGAAAGGCCGTCCTGAAATGCTGAACCTGAAAGATATGATCCACCACTTTGTGGATCACAGGCATGATGTGATCGTTCGCCGTACGAAATTCGACCTGATCCAGGCGGAAAAACGTGCTCACATCCTGGAGGGCTTGCTCATTGCTCAGAAAAATATTGAAGAGGTGATTAAGGTGATCCGCGAAAGTGCTTCGCCCGATATTGCCCGCGACGAATTGATGGCCCGCTTTTCTTTATCGGAAATCCAGGCCCGCGCCATCCTCGATATGCGTCTGAGAACATTGACAGGACTGGAGGTTGACAAATTGAATGCAGAATATGCAGAGCTCATGAAAACAATCGAGCACCTGAAAAATGTATTGGCCAATGAGCCGCTACGCTACCAGATCATCAAGGAAGAGCTGACGGAAGTGCGGGATAAATACGGAGACGAGCGCCGCACAGACATCGTGTATGCAGGAGATGATTTCCGTGTGGAAGATATGATCGCCGATGAGAATGTGGTGATCACCATCTCACACATGGGGTATATGAAGCGAACGAACCTGGCGGAGTACCGCGCGCAAAACCGCGGTGGACGAGGAAGCAAAGGAACCGCCACGCGCGACGAGGATTTTGTGGAGCATATGTTCATTGCCTCCACGCACAACTATATTTTACTGTTCAGCGAAAAAGGCCAGTGCTATTGGATCAGGGCGTATGAAGTGCCTGAGGGGAACAAGCAAAATGGCATCATCAAAAAAACATCGGTAGAAGCTTACTCGCGCCCACGTGCCAATGGCATCAATGCGATCACGATCCGGGAAGGGGATGTGCTGCTGAAAGCTGCGCTTACCAACGGGAAGAACGAGATCATGCTGGCTACCAAATTAGGTAAGGTGTGCCGTTTCCCTGAGGAGAAAGTAAGGCCGATGGGACGTAATGCCAGCGGTGTGATGGGAATTGACCTGAACGACGATGAAGGTGGCAATAACGAAGTGATCGGTATGATTTGCATCGACGATATGAATGCCAATGTACTGGTGGTATCGGAAAAAGGCTATGGCAAGCGCTCGGATATTGACGAGTACAGGATCACCAACCGTGGTGGAAAAGGAGTGAAGACCATCAACATCACGGATAAAACGGGGAACCTGGTAGGCATTAAGTCGGTAACGGATGCCAATGACCTGATGATCATCACGAAGAACGGTATTACGATCCGGATGAACGTGGCCGACCTGAGGGTGATGGGACGTGCCACGCAAGGGGTGCGCCTGATCACGATCCAGGAGAACGACCGTATTGCGGCGGTAACGAAGGTGGATCACGAGGATGAGGAAACTGAAGTACTGGCCGATGGTTCGGTAGCTGTTTCCGAAGCTCCGGTGGTAAGCGATAATGAAACGATTGCGAATAGCCCGAACGGGGACGAAACACCTGCTTCTGATGAAAATACTACACCAACGGATGATAATAATTAA

Transcript

HOLI00002.g19486.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GKT9	DNA gyrase subunit A OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=gyrA PE=3 SV=1
Q99XG5	DNA gyrase subunit A OS=Staphylococcus aureus (strain N315) OX=158879 GN=gyrA PE=1 SV=1
Q2G2Q0	DNA gyrase subunit A OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=gyrA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011147 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03989 all species →	DNA_gyraseA_C	DNA gyrase C-terminal domain, beta-propeller	Repeat	Interproscan
PF00521 all species →	DNA_topoisoIV	DNA gyrase/topoisomerase IV, subunit A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013757 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, alpha-helical domain superfamily	Interproscan
IPR005743 all species →	Family	DNA gyrase, subunit A	Interproscan
IPR002205 all species →	Domain	DNA topoisomerase, type IIA, domain A	Interproscan
IPR013758 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, domain A, alpha-beta	Interproscan
IPR035516 all species →	Homologous_superfamily	DNA gyrase/topoisomerase IV, subunit A, C-terminal	Interproscan
IPR050220 all species →	Family	Type II DNA Topoisomerases	Interproscan
IPR006691 all species →	Repeat	DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat	Interproscan
IPR013760 all species →	Homologous_superfamily	DNA topoisomerase, type IIA-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43493 all species →	DNA GYRASE/TOPOISOMERASE SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0006259 all species →	Biological Process	DNA metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009330 all species →	Cellular Component	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex	Interproscan
GO:0003916 all species →	Molecular Function	DNA topoisomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02469	gyrA; DNA gyrase subunit A	EC:5.6.2.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.