Genomic Location: HOLI00002:2628896...2630239
NR annotation: MBL7937661.1, ATP-dependent Clp protease ATP-binding subunit [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g19487.t1 |
| Transcript |
| HOLI00002.g19487.t1 |
| Protein |
| HOLI00002.G19487 |
| UniProt accession | Description |
|---|---|
| Q8EU05 | Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=clpB PE=3 SV=1 |
| P37571 | Negative regulator of genetic competence ClpC/MecB OS=Bacillus subtilis (strain 168) OX=224308 GN=clpC PE=1 SV=1 |
| P35100 | Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013926 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00004 all species → | AAA | ATPase family associated with various cellular activities (AAA) | Domain | Interproscan |
| PF17871 all species → | AAA_lid_9 | AAA lid domain | Domain | Interproscan |
| PF02861 all species → | Clp_N | Clp amino terminal domain, pathogenicity island component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR004176 all species → | Domain | Clp, repeat (R) domain | Interproscan |
| IPR003959 all species → | Domain | ATPase, AAA-type, core | Interproscan |
| IPR018368 all species → | Conserved_site | ClpA/B, conserved site 1 | Interproscan |
| IPR036628 all species → | Homologous_superfamily | Clp, N-terminal domain superfamily | Interproscan |
| IPR050130 all species → | Family | ATP-dependent Clp protease/Chaperone ClpA/ClpB | Interproscan |
| IPR041546 all species → | Domain | ClpA/ClpB, AAA lid domain | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11638 all species → | ATP-DEPENDENT CLP PROTEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0034605 all species → | Biological Process | cellular response to heat | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03696 | clpC; ATP-dependent Clp protease ATP-binding subunit ClpC | - | Chaperones and folding catalysts | ko03110 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
