Gene detail

Detailed information of HOLI00002.G19574 in Hydra oligactis

Genomic Location: HOLI00002:2723394...2726381
NR annotation: MBP8033964.1, hypothetical protein [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HOLI00002.g19574.t1

ATGGCTTTGAAGCGACTGATACACATTCTTTTCCTGTTCCTGATCTGCAGGAGCGGCAGCGCACAGCGCTCCGATATGGATTTTGTATTTGCCAATCCTGTGTTCCAGAACTATACGATGAAGAACGGTCTTGTATCGAACTACTGTTATGATGTTTTGCAGGATAAACGCGGCTATATATGGGTGGCAACCTTAAACGGCCTGTGCCGTTTCAACGGGAATAAGTGGCAGGTGTACCAGCAGCAAAGCCCGAACCCTCATTATAAATTGCCGGGAAACTGGGTTGTTGATATCGATGAGGATGTCATGGGTAACATCAGGATCAATACAGACCGGGGAATTGCCACGTATAAAGCGCAAAAAGATTCGGTGTATGCCTTTCAGGCCCCGCCCAAAGGCTGGGGAAAGATTTTATGCCAGGGCAACCATGTGTTTGTATCGTCCTGGTCGGGTATCGATCAATACCGCCTGGCAGGAGACGTTATGGTTCAGGAAAAACATTATGACGAATCGGAAAAAAATTCATTCATGTGCCTGTATGCCGGGAACGACGGGCGGGTGTGGGCATGCCCTGAAGATCATCCCTCTTTAATGGAAATCCATGCGGATACCAGGGAGATCAGGCATCACAGAACCATCATGCTGGATGGAAAACCGCTGGAGGTCATAGTCAATTCAATAACCGCTTACAGTGCCGATACCCTGTTATTAAGCACGAAAACAGAAGGCCTCTTAAAATACAGTTCCCGAAGTAACACCGCCATCCGTTGTTTAAGCACCGTGTTAAAGCCCGGAGGCGAGTTTAGTTGTGCGTTGATCTACAAGCTCCAGGGGCGGTCTTTTTTACTCGCAGGCACAAAAAATAATGGCTTATGCTGCGTTGGTCTGAGTACGCAGAATGTGTTTTGGTACAGGCATGATCAAAACGATCCGGGCAGTTTGTTATCGGATGACATCACGGCCATTTTTCCGGATGCGAATGAAGGTCTGTGGATCGCTACGGCTAAGGGCCTGAGCTTTTTTCATCCTTCCCTCCAAAAGAACAAATATTATTATTTTTATAATAATGCAGCGGTGCCTCCCGGGGTCTTGATCAACGCGGTGTATCAATTGAATGAAGCGGAGTTTTTAGTAGGCACCGATCATAACGGCTTGTTCTGGCATCAGGGCATGACGAAAGAAACCCGGCAAATCCCGGTTGCAGGAAAGGCCCCGCTGAAAATAACGTCTTTTTGCCGCCTCCATGCAAACAGCATTGTCATTGGCACTAACAGGGGGCTTTTTACATACACCGTCGGCAGCCACTCGGTAAAGCCGTTATGGATAGAGGGAAAACCGTTTCCGCATAGTGTGTTTGCCGTGAAAAAACTGGAAGGAGGGAAGTTGGGCCTTTGTACAAGCAAAGGTGTTGTGGTGTATGATCCAGTGCGCGACAAGGTGGTGTATACGGAATTGACCGGTGATAGCACCGAACAGGAGCACAACTACTGCAAGGATGTATTTTTAAAAGGAAACGACCTGTGGGTGCTGCGCTTATTCAACGGTTACGAAAAGCATACGATTTCAACCCACCAAACAAGCGATCTTACTCCCCGGGGCTTTCTTGGCAAACCCATCGATTATCACGGGTTCTCCGCCGGCTTAAATGCGCTGTATGTTGCTACGACAGCCGGGATCATCGTTCAGGACCTCAAGGAGCAGGGCGCAGTGCAACTACTGAGAACGCCGGAAGGGCTCCAGGGCGATGCTATCGAAAATGTATTTTATTTTCGAAACGGCCTTTTGTATTATACCACTCCCGAAGGCTTGTACCGCTATCACATCAGCCACCGTAAAAGCGACCGCATGGTGAGCTACGAAAATTACCCTCAAAAATGGTTCAACCAGTTAAGCCTGTCTGATGACAGCCTGTTGATCTATACGGTTTCCGATTACTTCATGATCAACAATCCCTTTTTCAATTTCAGAAATAGCAGAACGCCGCAGTGCTATATAGAGCAGGTTTCTGCAAACGGGAAGCAGCTCACCGATCTTAGGGATACCCTGGTGTTTCAACATCACCAGAATAATATTGTGATCAGCCTTGCCGCTTTGGTGTATCCCGAGTCTGAAAAAAATGCCTGGTATTACCGTTGCAATAAGCCGGATACCGCCTTAAAAGCAGCTGCCAAGGGAGAGATCATCTTAAATAATCTGCCGCCGGGGATGTACGAATTAAGCATTTACTCGGTTAATAACGAAGGCGCCCGGTCGGAGCACACAAAGAAACTGTGGCTCATAATCAACAACCCATTCTATAGCACCTGGTGGTTTTACAGCATCCTTTTTTTAATAGTTGTAACCGGGATTTACCTGCCGTTTGTATACAGGAAAGCACAGCGCGACCGTTTAGTTAAAATAAGGAACCAGATCTCGCGCGACCTGCATGATGAGCTGGGATCTAATGTAAGCAGCATTCATATCATGGCGGGGATGCTGTTGAACAGGCAAAAGCAGGATGATAACCAGGCACTGCACAATATCTCGAAGTATTCGGTGCAGATCAGCGATACCATCAATGACATCATCTGGAACATCAATCCCAAGTTTGATTCCGTAGATGAGCTGATCAAAAAAATGGTCCGTTATGCCTCGGAGTCGCTGGATGCGGCACGGATCAATTATAAGGTCCAGGTGCCGCATGCGGTTGCAAACGTGGAGATCGACAACGACCTGAAATACCATTTGTACCTGCTGTTCAAGGAGGCAGTAAACAATGCGGCCAAATATTCGTTAGCAAGCCTCGTAAGCATATCCGTAAATTATACAGATCGTGTTTTTTCGTTTTCGGTCAAAGACAATGGCATTGGGTTTAATACCAGGGAAACCGAAAAAGGGAACGGGCTCTACAATATGAGGTCGAGGGCAAAAGAAATCAAAGCGTTGTTTACGGTCACATCAGCCCCGCATGAAGGAACAGAAATTCATTTAACTGTAAAATTGAAATGA

Transcript

HOLI00002.g19574.t1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0063718 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07730 all species →	HisKA_3	Histidine kinase	Domain	Interproscan
PF07494 all species →	Reg_prop	Two component regulator propeller	Repeat	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR011712 all species →	Domain	Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain	Interproscan
IPR011110 all species →	Repeat	Two component regulator propeller	Interproscan
IPR050482 all species →	Family	Sensor Histidine Kinase Two-Component System	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24421 all species →	NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00002.G19574.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.