Detailed information of HOLI00002.G19604 in Hydra oligactis

Genomic Location: HOLI00002:2759759...2761957
NR annotation: MBK8368519.1, bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O52177GTP pyrophosphokinase OS=Myxococcus xanthus OX=34 GN=relA PE=3 SV=1
O54408GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) OX=224308 GN=relA PE=1 SV=3
O67012Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=spoT PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010171 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13291
all species →		ACT_4ACT domainDomainInterproscan
PF02824
all species →		TGSTGS domainDomainInterproscan
PF04607
all species →		RelA_SpoTRegion found in RelA / SpoT proteinsFamilyInterproscan
PF13328
all species →		HD_4HD domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006674
all species →		DomainHD domainInterproscan
IPR045865
all species →		Homologous_superfamilyACT-like domainInterproscan
IPR033655
all species →		DomainRelA/SpoT, TGS domainInterproscan
IPR002912
all species →		DomainACT domainInterproscan
IPR004095
all species →		DomainTGSInterproscan
IPR043519
all species →		Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR003607
all species →		DomainHD/PDEase domainInterproscan
IPR004811
all species →		FamilyRelA/SpoT familyInterproscan
IPR007685
all species →		DomainRelA/SpoTInterproscan
IPR012676
all species →		Homologous_superfamilyTGS-likeInterproscan
IPR012675
all species →		Homologous_superfamilyBeta-grasp domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21262
all species →		GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005618
all species →		Cellular Componentcell wallInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0015969
all species →		Biological Processguanosine tetraphosphate metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01139spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphataseEC:2.7.6.5
EC:3.1.7.2
Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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