Gene detail

Detailed information of HOLI00002.G19707 in Hydra oligactis

Genomic Location: HOLI00002:2882938...2884077
NR annotation: MBL7913240.1, error-prone DNA polymerase [Bacteroidia bacterium]
Species abbreviation HOLIG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3M9Z5	Error-prone DNA polymerase OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=dnaE2 PE=3 SV=1
Q92LA6	Error-prone DNA polymerase 1 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=dnaE2-1 PE=3 SV=1
A6UDW8	Error-prone DNA polymerase OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=dnaE2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0081080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14579 all species →	HHH_6	Helix-hairpin-helix motif	Domain	Interproscan
PF01336 all species →	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004805 all species →	Family	Error-prone DNA polymerase/DNA polymerase III subunit alpha DnaE/PolC	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR029460 all species →	Domain	DNA polymerase, helix-hairpin-helix motif	Interproscan
IPR004365 all species →	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32294 all species →	DNA POLYMERASE III SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00002.G19707.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.