Gene detail

Detailed information of HOLI00002.G20128 in Hydra oligactis

Genomic Location: HOLI00002:3393890...3395299
NR annotation: MBP8033462.1, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AA22	Uncharacterized RNA methyltransferase BT_0643 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=BT_0643 PE=3 SV=1
Q7MVG9	Uncharacterized RNA methyltransferase PG_1095 OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) OX=242619 GN=PG_1095 PE=3 SV=1
Q8KGF9	Uncharacterized RNA methyltransferase CT0009 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=CT0009 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003170 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05958 all species →	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan
PF01938 all species →	TRAM	TRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010280 all species →	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR030390 all species →	Active_site	RNA methyltransferase TrmA, active site	Interproscan
IPR030391 all species →	Conserved_site	RNA methyltransferase TrmA, conserved site	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR002792 all species →	Domain	TRAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11061 all species →	RNA M5U METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0070041 all species →	Molecular Function	rRNA (uridine-C5-)-methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03215	rumA; 23S rRNA (uracil1939-C5)-methyltransferase	EC:2.1.1.190	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.