Detailed information of HOLI00002.G20134 in Hydra oligactis

Genomic Location: HOLI00002:3404915...3407365
NR annotation: MBK8366180.1, histidine--tRNA ligase [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6KXA6Histidine--tRNA ligase OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=hisS PE=3 SV=1
Q8A6N7Histidine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=hisS PE=3 SV=1
Q64QS2Histidine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=hisS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002441 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11551
all species →		Omp28Outer membrane protein Omp28FamilyInterproscan
PF13393
all species →		tRNA-synt_HisHistidyl-tRNA synthetaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR041715
all species →		DomainClass II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domainInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR021615
all species →		FamilyOuter membrane protein Omp28Interproscan
IPR015807
all species →		FamilyHistidine-tRNA ligaseInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11476
all species →		HISTIDYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004821
all species →		Molecular Functionhistidine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006427
all species →		Biological Processhistidyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI00002.G20134.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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