Gene detail

Detailed information of HOLI00002.G20156 in Hydra oligactis

Genomic Location: HOLI00002:3445387...3446175
NR annotation: MBA4241667.1, glycosyl transferase family 2 [Sphingobacteriaceae bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O05519	Putative ATP-binding protein YdiF OS=Bacillus subtilis (strain 168) OX=224308 GN=ydiF PE=3 SV=2
Q9FIB4	ABC transporter F family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCF2 PE=3 SV=2
Q9LV93	ABC transporter F family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCF5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012805 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF16326 all species →	ABC_tran_CTD	ABC transporter C-terminal domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR051309 all species →	Family	ABC transporter ABCF subfamily ATPase	Interproscan
IPR032524 all species →	Domain	ABC transporter Uup, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037118 all species →	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42855 all species →	ABC TRANSPORTER ATP-BINDING SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06158	ABCF3; ATP-binding cassette, subfamily F, member 3	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.