Genomic Location: HOLI00002:3466781...3470359
NR annotation: MBA3662767.1, peptide MFS transporter [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g20170.t1 |
| Transcript |
| HOLI00002.g20170.t1 |
| Protein |
| HOLI00002.G20170 |
| UniProt accession | Description |
|---|---|
| P94408 | Uncharacterized transporter YclF OS=Bacillus subtilis (strain 168) OX=224308 GN=yclF PE=3 SV=2 |
| A0A2R9TD79 | Peptide transporter YePEPT OS=Yersinia enterocolitica subsp. palearctica serotype O:3 (strain YE-P4) OX=1329364 GN=YEP4_02370 PE=1 SV=1 |
| A0KMY1 | Dipeptide and tripeptide permease B OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=dtpB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0026328 (this species only) · gene tree & orthology |
| Transcription factor family | CSD · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00313 all species → | CSD | 'Cold-shock' DNA-binding domain | Domain | Interproscan |
| PF00854 all species → | PTR2 | POT family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002059 all species → | Domain | Cold-shock protein, DNA-binding | Interproscan |
| IPR005279 all species → | Family | Dipeptide/tripeptide permease | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR036259 all species → | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| IPR011129 all species → | Domain | Cold shock domain | Interproscan |
| IPR018456 all species → | Conserved_site | PTR2 family proton/oligopeptide symporter, conserved site | Interproscan |
| IPR050171 all species → | Family | Major Facilitator Superfamily (MFS) Transporters | Interproscan |
| IPR000109 all species → | Family | Proton-dependent oligopeptide transporter family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23517 all species → | RESISTANCE PROTEIN MDTM, PUTATIVE-RELATED-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0015833 all species → | Biological Process | peptide transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:1904680 all species → | Molecular Function | peptide transmembrane transporter activity | Interproscan |
| GO:0006857 all species → | Biological Process | oligopeptide transport | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03305 | TC.POT; proton-dependent oligopeptide transporter, POT family | - | Transport | - | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
