Genomic Location: HOLI00002:3477442...3479403
NR annotation: MBC7695030.1, sensor histidine kinase [Burkholderiales bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g20177.t1 |
| Transcript |
| HOLI00002.g20177.t1 |
| Protein |
| HOLI00002.G20177 |
| UniProt accession | Description |
|---|---|
| Q7WZY5 | Oxygen sensor histidine kinase NreB OS=Staphylococcus carnosus (strain TM300) OX=396513 GN=nreB PE=1 SV=1 |
| Q8CR97 | Oxygen sensor histidine kinase NreB OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=nreB PE=3 SV=1 |
| Q5HLK5 | Oxygen sensor histidine kinase NreB OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=nreB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013509 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07730 all species → | HisKA_3 | Histidine kinase | Domain | Interproscan |
| PF02518 all species → | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| PF13424 all species → | TPR_12 | Tetratricopeptide repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050482 all species → | Family | Sensor Histidine Kinase Two-Component System | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR004358 all species → | Domain | Signal transduction histidine kinase-related protein, C-terminal | Interproscan |
| IPR011712 all species → | Domain | Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR003594 all species → | Domain | Histidine kinase/HSP90-like ATPase | Interproscan |
| IPR005467 all species → | Domain | Histidine kinase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24421 all species → | NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
| GO:0000155 all species → | Molecular Function | phosphorelay sensor kinase activity | Interproscan |
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
HOLI00002.G20177.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
