Gene detail

Detailed information of HOLI00002.G20190 in Hydra oligactis

Genomic Location: HOLI00002:3497502...3498122
NR annotation: MBA4241127.1, RNA polymerase subunit sigma-24 [Sphingobacteriaceae bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O07582	ECF RNA polymerase sigma factor SigM OS=Bacillus subtilis (strain 168) OX=224308 GN=sigM PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012546 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04542 all species →	Sigma70_r2	Sigma-70 region 2	Domain	Interproscan
PF08281 all species →	Sigma70_r4_2	Sigma-70, region 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014284 all species →	Domain	RNA polymerase sigma-70 like domain	Interproscan
IPR039425 all species →	Family	RNA polymerase sigma-70 like	Interproscan
IPR007627 all species →	Domain	RNA polymerase sigma-70 region 2	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan
IPR013325 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 2	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR013249 all species →	Domain	RNA polymerase sigma factor 70, region 4 type 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43133 all species →	RNA POLYMERASE ECF-TYPE SIGMA FACTO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016987 all species →	Molecular Function	sigma factor activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.