Gene detail

Detailed information of HOLI00002.G20522 in Hydra oligactis

Genomic Location: HOLI00002:3879357...3881108
NR annotation: MBI2722199.1, PAS domain-containing sensor histidine kinase [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AGA8	Transcriptional regulatory protein UhpA OS=Escherichia coli O157:H7 OX=83334 GN=uhpA PE=3 SV=1
P0AGA7	Transcriptional regulatory protein UhpA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=uhpA PE=3 SV=1
P0AGA6	Transcriptional regulatory protein UhpA OS=Escherichia coli (strain K12) OX=83333 GN=uhpA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00196 all species →	GerE	Bacterial regulatory proteins, luxR family	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000792 all species →	Domain	Transcription regulator LuxR, C-terminal	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR016032 all species →	Homologous_superfamily	Signal transduction response regulator, C-terminal effector	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43047 all species →	TWO-COMPONENT HISTIDINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009927 all species →	Molecular Function	histidine phosphotransfer kinase activity	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for HOLI00002.G20522.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.