Detailed information of HOLI00002.G20876 in Hydra oligactis

Genomic Location: HOLI00002:4317945...4318565
NR annotation: MBI3521269.1, response regulator transcription factor [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9AE24Transcriptional regulatory protein RprY OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=rprY PE=3 SV=2
Q82EB1Transcriptional regulatory protein CseB OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=cseB PE=3 SV=1
I1WSZ4Transcriptional activator protein IrlR OS=Burkholderia pseudomallei (strain 1026b) OX=884204 GN=irlR PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0209123 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00486
all species →		Trans_reg_CTranscriptional regulatory protein, C terminalDomainInterproscan
PF00072
all species →		Response_regResponse regulator receiver domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001867
all species →		DomainOmpR/PhoB-type DNA-binding domainInterproscan
IPR039420
all species →		FamilyTranscriptional regulatory protein WalR-likeInterproscan
IPR011006
all species →		Homologous_superfamilyCheY-like superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001789
all species →		DomainSignal transduction response regulator, receiver domainInterproscan
IPR016032
all species →		Homologous_superfamilySignal transduction response regulator, C-terminal effectorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48111
all species →		REGULATOR OF RPOSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000160
all species →		Biological Processphosphorelay signal transduction systemInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000156
all species →		Molecular Functionphosphorelay response regulator activityInterproscan
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0032993
all species →		Cellular Componentprotein-DNA complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for HOLI00002.G20876.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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