Genomic Location: HOLI00002:4794117...4794899
NR annotation: MBP8033784.1, bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB [Bacteroidia bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00002.g21280.t1 |
| Transcript |
| HOLI00002.g21280.t1 |
| Protein |
| HOLI00002.G21280 |
| UniProt accession | Description |
|---|---|
| Q8ABA7 | Histidine biosynthesis bifunctional protein HisB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=hisB PE=1 SV=1 |
| D2QPE6 | Histidine biosynthesis bifunctional protein HisB OS=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896 / Claus 1) OX=504472 GN=hisB PE=1 SV=1 |
| Q5LB00 | Histidine biosynthesis bifunctional protein HisB OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=hisB PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13242 all species → | Hydrolase_like | HAD-hyrolase-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005954 all species → | Domain | Histidine biosynthesis bifunctional protein, N-terminal histidinol-phosphatase domain | Interproscan |
| IPR038494 all species → | Homologous_superfamily | Imidazole glycerol phosphate dehydratase domain superfamily | Interproscan |
| IPR004446 all species → | Family | D,D-heptose 1,7-bisphosphate phosphatase | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR023214 all species → | Homologous_superfamily | HAD superfamily | Interproscan |
| IPR006549 all species → | Domain | HAD-superfamily hydrolase,subfamily IIIA | Interproscan |
| IPR006543 all species → | Domain | Histidinol-phosphate phosphatase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42891 all species → | D-GLYCERO-BETA-D-MANNO-HEPTOSE-1,7-BISPHOSPHATE 7-PHOSPHATASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0004401 all species → | Molecular Function | histidinol-phosphatase activity | Interproscan |
| GO:0004424 all species → | Molecular Function | imidazoleglycerol-phosphate dehydratase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0016791 all species → | Molecular Function | phosphatase activity | Interproscan |
HOLI00002.G21280.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
