Gene detail

Detailed information of HOLI00002.G21985 in Hydra oligactis

Genomic Location: HOLI00002:5606033...5608060
NR annotation: MCD6019319.1, soluble lytic murein transglycosylase-like protein [Bacteroidota bacterium]
Species Hydra oligactis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AEZ8	Membrane-bound lytic murein transglycosylase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=mltD PE=3 SV=1
P0AEZ7	Membrane-bound lytic murein transglycosylase D OS=Escherichia coli (strain K12) OX=83333 GN=mltD PE=1 SV=1
P39046	Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258 / NCTC 12367 / WDCM 00089 / R) OX=768486 GN=EHR_05900 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0027376 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04542 all species →	Sigma70_r2	Sigma-70 region 2	Domain	Interproscan
PF08281 all species →	Sigma70_r4_2	Sigma-70, region 4	Domain	Interproscan
PF01476 all species →	LysM	LysM domain	Domain	Interproscan
PF01464 all species →	SLT	Transglycosylase SLT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007627 all species →	Domain	RNA polymerase sigma-70 region 2	Interproscan
IPR023346 all species →	Homologous_superfamily	Lysozyme-like domain superfamily	Interproscan
IPR014284 all species →	Domain	RNA polymerase sigma-70 like domain	Interproscan
IPR000189 all species →	Active_site	Prokaryotic transglycosylase, active site	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036779 all species →	Homologous_superfamily	LysM domain superfamily	Interproscan
IPR013249 all species →	Domain	RNA polymerase sigma factor 70, region 4 type 2	Interproscan
IPR018392 all species →	Domain	LysM domain	Interproscan
IPR008258 all species →	Domain	Transglycosylase SLT domain 1	Interproscan
IPR013325 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 2	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33734 all species →	LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000270 all species →	Biological Process	peptidoglycan metabolic process	Interproscan
GO:0008933 all species →	Molecular Function	lytic transglycosylase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016987 all species →	Molecular Function	sigma factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08307	mltD, dniR; peptidoglycan lytic transglycosylase D	EC:4.2.2.29	Peptidoglycan biosynthesis and degradation proteins	ko01011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.