Genomic Location: HOLI00014:1209036...1210696
NR annotation: NBW48595.1, MarR family EPS-associated transcriptional regulator [Betaproteobacteria bacterium]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00014.g10301.t1 |
| Transcript |
| HOLI00014.g10301.t1 |
| Protein |
| HOLI00014.G10301 |
| UniProt accession | Description |
|---|---|
| Q9RHD7 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa OX=287 GN=wbpO PE=1 SV=1 |
| Q04972 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Salmonella typhi OX=90370 GN=wcdA PE=1 SV=1 |
| P39861 | Protein CapL OS=Staphylococcus aureus OX=1280 GN=capL PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0017058 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13412 all species → | HTH_24 | Winged helix-turn-helix DNA-binding | Domain | Interproscan |
| PF03721 all species → | UDPG_MGDP_dh_N | UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Domain | Interproscan |
| PF00984 all species → | UDPG_MGDP_dh | UDP-glucose/GDP-mannose dehydrogenase family, central domain | Domain | Interproscan |
| PF03720 all species → | UDPG_MGDP_dh_C | UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR028359 all species → | Family | UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase | Interproscan |
| IPR008927 all species → | Homologous_superfamily | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily | Interproscan |
| IPR017476 all species → | Family | UDP-glucose/GDP-mannose dehydrogenase | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036220 all species → | Homologous_superfamily | UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR026433 all species → | Family | EPS-associated transcriptional regulator, MarR family | Interproscan |
| IPR001732 all species → | Domain | UDP-glucose/GDP-mannose dehydrogenase, N-terminal | Interproscan |
| IPR014026 all species → | Domain | UDP-glucose/GDP-mannose dehydrogenase, dimerisation | Interproscan |
| IPR014027 all species → | Domain | UDP-glucose/GDP-mannose dehydrogenase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43491 all species → | UDP-N-ACETYL-D-MANNOSAMINE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000271 all species → | Biological Process | polysaccharide biosynthetic process | Interproscan |
| GO:0016628 all species → | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0016616 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
HOLI00014.G10301.Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
