Genomic Location: HOLI00014:814737...816182
NR annotation: WP_105262948.1, sensor histidine kinase [Rhodoferax sp. TS-BS-61-7]
Species Hydra oligactis · all data for this species · gene families
| CDS |
| HOLI00014.g9976.t1 |
| Transcript |
| HOLI00014.g9976.t1 |
| Protein |
| HOLI00014.G9976 |
| UniProt accession | Description |
|---|---|
| Q8Z3P2 | Sensor protein QseC OS=Salmonella typhi OX=90370 GN=qseC PE=3 SV=1 |
| Q8ZLZ9 | Sensor protein QseC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=qseC PE=3 SV=1 |
| Q8X524 | Sensor protein QseC OS=Escherichia coli O157:H7 OX=83334 GN=qseC PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0024839 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08521 all species → | 2CSK_N | Two-component sensor kinase N-terminal | Family | Interproscan |
| PF02518 all species → | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| PF00512 all species → | HisKA | His Kinase A (phospho-acceptor) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005467 all species → | Domain | Histidine kinase domain | Interproscan |
| IPR013727 all species → | Domain | Two-component sensor kinase, N-terminal | Interproscan |
| IPR003594 all species → | Domain | Histidine kinase/HSP90-like ATPase | Interproscan |
| IPR003661 all species → | Domain | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain | Interproscan |
| IPR036097 all species → | Homologous_superfamily | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR003660 all species → | Domain | HAMP domain | Interproscan |
| IPR050428 all species → | Family | Two-component system sensor histidine kinase | Interproscan |
| IPR004358 all species → | Domain | Signal transduction histidine kinase-related protein, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45436 all species → | SENSOR HISTIDINE KINASE YKOH | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000155 all species → | Molecular Function | phosphorelay sensor kinase activity | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07649 | tctE; two-component system, OmpR family, sensor histidine kinase TctE | EC:2.7.13.3 | Two-component system | ko02022 | deepkoala |
Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
