Detailed information of HOLI00014.G9981 in Hydra oligactis

Genomic Location: HOLI00014:819305...820240
NR annotation: WP_105262952.1, N-acetyl-gamma-glutamyl-phosphate reductase [Rhodoferax sp. TS-BS-61-7]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1IXY5N-acetyl-gamma-glutamyl-phosphate reductase OS=Deinococcus geothermalis (strain DSM 11300 / CIP 105573 / AG-3a) OX=319795 GN=argC PE=3 SV=1
Q9A8H5N-acetyl-gamma-glutamyl-phosphate reductase OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=argC PE=3 SV=1
B8H555N-acetyl-gamma-glutamyl-phosphate reductase OS=Caulobacter vibrioides (strain NA1000 / CB15N) OX=565050 GN=argC PE=3 SV=1
 Pfam domain
No Pfam domain signature was recorded for HOLI00014.G9981 in Hydra oligactis.
 InterPro
InterPro termTypeDescriptionSource
IPR010136
all species →		FamilyN-acetyl-gamma-glutamyl-phosphate reductase, type 2Interproscan
IPR050085
all species →		FamilyN-acetyl-gamma-glutamyl-phosphate reductaseInterproscan
IPR000534
all species →		DomainSemialdehyde dehydrogenase, NAD-bindingInterproscan
IPR023013
all species →		Active_siteN-acetyl-gamma-glutamyl-phosphate reductase, active siteInterproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR32338
all species →		N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE, CHLOROPLASTIC-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003942
all species →		Molecular FunctionN-acetyl-gamma-glutamyl-phosphate reductase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006526
all species →		Biological ProcessL-arginine biosynthetic processInterproscan
GO:0016620
all species →		Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0051287
all species →		Molecular FunctionNAD bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00145argC; N-acetyl-gamma-glutamyl-phosphate reductaseEC:1.2.1.38
Arginine biosynthesisko00220deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP