Detailed information of HOLI00059.G25755 in Hydra oligactis

Genomic Location: HOLI00059:243912...244517
NR annotation: WP_105261185.1, non-canonical purine NTP pyrophosphatase [Rhodoferax sp. TS-BS-61-7]
Species Hydra oligactis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q21XZ3dITP/XTP pyrophosphatase OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=Rfer_1630 PE=3 SV=1
A1TT41dITP/XTP pyrophosphatase OS=Paracidovorax citrulli (strain AAC00-1) OX=397945 GN=Aave_3578 PE=3 SV=1
A1WQF4dITP/XTP pyrophosphatase OS=Verminephrobacter eiseniae (strain EF01-2) OX=391735 GN=Veis_4156 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008446 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01725
all species →		Ham1p_likeHam1 familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002637
all species →		FamilyRdgB/HAM1Interproscan
IPR029001
all species →		Homologous_superfamilyInosine triphosphate pyrophosphatase-likeInterproscan
IPR020922
all species →		FamilydITP/XTP pyrophosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11067
all species →		INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009143
all species →		Biological Processnucleoside triphosphate catabolic processInterproscan
GO:0047429
all species →		Molecular Functionnucleoside triphosphate diphosphatase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0017111
all species →		Molecular Functionribonucleoside triphosphate phosphatase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01519rdgB, ITPA; XTP/dITP diphosphohydrolaseEC:3.6.1.66
Drug metabolism - other enzymesko00983deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Hydra oligactis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Hydra oligactis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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